Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0018768 Lotus japonicus HOM05D006437 ORTHO05D007973 9.6e-39 162.9 77 100.0
CANSAT78G0649 Cannabis sativa HOM05D006437 ORTHO05D007973 1.1e-34 149.4 75 89.3
Glyma.18G038851 Glycine max HOM05D006437 ORTHO05D007973 3.2e-34 147.9 77 88.3
Phvul.001G231901 Phaseolus vulgaris HOM05D006437 ORTHO05D007973 3.2e-34 147.9 77 87.0
Glyma.11G218400 Glycine max HOM05D006437 ORTHO05D007973 5.5e-34 147.1 77 88.3
TAR629G2663 Trochodendron aralioides HOM05D006437 ORTHO05D007973 5.5e-34 147.1 76 88.2
MELO3C020290.2 Cucumis melo HOM05D006437 ORTHO05D007973 7.1e-34 146.7 76 85.5
Eucgr.F02822 Eucalyptus grandis HOM05D006437 ORTHO05D007973 7.1e-34 146.7 76 92.1
Aqoxy5G01129 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 1.6e-33 145.6 75 86.7
ClCG05G010950 Citrullus lanatus HOM05D006437 ORTHO05D007973 1.6e-33 145.6 76 84.2
MD09G1261500 Malus domestica HOM05D006437 ORTHO05D007973 3.5e-33 144.4 73 89.0
Lalb_Chr10g0104501 Lupinus albus HOM05D006437 ORTHO05D007973 4.6e-33 144.1 78 85.9
Ciclev10013249m.g Citrus clementina HOM05D006437 ORTHO05D007973 6.0e-33 143.7 75 86.7
Lalb_Chr10g0104491 Lupinus albus HOM05D006437 ORTHO05D007973 6.0e-33 143.7 77 87.0
Cfa007843 Carpinus fangiana HOM05D006437 ORTHO05D007973 1.0e-32 142.9 77 83.1
ECA238G0319 Erigeron canadensis HOM05D006437 ORTHO05D007973 1.0e-32 142.9 77 88.3
SalBow7G1639 Salvia bowleyana HOM05D006437 ORTHO05D007973 1.0e-32 142.9 76 84.2
Migut.L00468 Erythranthe guttata HOM05D006437 ORTHO05D007973 1.3e-32 142.5 76 84.2
Medtr3g067715 Medicago truncatula HOM05D006437 ORTHO05D007973 1.3e-32 142.5 77 83.1
Thecc.04G121100 Theobroma cacao HOM05D006437 ORTHO05D007973 1.3e-32 142.5 77 83.1
GSVIVG01030860001 Vitis vinifera HOM05D006437 ORTHO05D007973 1.3e-32 142.5 75 84.0
HanXRQChr07g0193741 Helianthus annuus HOM05D006437 ORTHO05D007973 1.8e-32 142.1 73 89.0
Cc07_g08170 Coffea canephora HOM05D006437 ORTHO05D007973 6.7e-32 140.2 76 84.2
Ca_08164_v3 Cicer arietinum L. HOM05D006437 ORTHO05D007973 8.7e-32 139.8 72 88.9
Lsat_1_v5_gn_2_81461 Lactuca sativa HOM05D006437 ORTHO05D007973 1.1e-31 139.4 77 84.4
PGR042G3666 Punica granatum HOM05D006437 ORTHO05D007973 1.1e-31 139.4 76 81.6
CiPaw.03G068600 Carya illinoinensis HOM05D006437 ORTHO05D007973 1.5e-31 139.0 75 84.0
TPR.G15845 Trifolium pratense HOM05D006437 ORTHO05D007973 1.5e-31 139.0 77 81.8
TAR371G0259 Trochodendron aralioides HOM05D006437 ORTHO05D007973 1.5e-31 139.0 74 81.1
Dinv19010 Davidia involucrata HOM05D006437 ORTHO05D007973 3.3e-31 137.9 67 92.5
Nn3g18216 Nelumbo nucifera HOM05D006437 ORTHO05D007973 3.3e-31 137.9 75 82.7
Nn4g24140 Nelumbo nucifera HOM05D006437 ORTHO05D007973 4.3e-31 137.5 76 80.3
Haze_14223 Corylus avellana HOM05D006437 ORTHO05D007973 5.6e-31 137.1 76 78.9
TAR371G1269 Trochodendron aralioides HOM05D006437 ORTHO05D007973 7.4e-31 136.7 74 79.7
PSO017G0604 Papaver somniferum HOM05D006437 ORTHO05D007973 9.6e-31 136.3 76 75.0
PSO478G4394 Papaver somniferum HOM05D006437 ORTHO05D007973 9.6e-31 136.3 76 75.0
QL11p004106 Quercus lobata HOM05D006437 ORTHO05D007973 9.6e-31 136.3 74 79.7
Cpa.g.sc604.3 Carica papaya HOM05D006437 ORTHO05D007973 2.1e-30 135.2 74 81.1
Nitab4.5_0004399g0060 Nicotiana tabacum HOM05D006437 ORTHO05D007973 2.1e-30 135.2 76 78.9
Sed0002962 Sechium edule HOM05D006437 ORTHO05D007973 3.7e-30 134.4 76 76.3
Solyc02g091390.3 Solanum lycopersicum HOM05D006437 ORTHO05D007973 3.7e-30 134.4 74 81.1
Sopen02g036010 Solanum pennellii HOM05D006437 ORTHO05D007973 3.7e-30 134.4 74 81.1
PGSC0003DMG400030646 Solanum tuberosum HOM05D006437 ORTHO05D007973 3.7e-30 134.4 74 81.1
EL10Ac2g04484 Beta vulgaris HOM05D006437 ORTHO05D007973 4.8e-30 134.0 74 81.1
CSS0043713 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 6.2e-30 133.7 69 85.5
Manes.02G074600 Manihot esculenta HOM05D006437 ORTHO05D007973 1.8e-29 132.1 73 80.8
Aa31LG5G13890 Aethionema arabicum HOM05D006437 ORTHO05D007973 2.4e-29 131.7 72 80.6
CSS0019264 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 3.1e-29 131.3 74 79.7
Medtr3g067720 Medicago truncatula HOM05D006437 ORTHO05D007973 3.1e-29 131.3 77 76.6
AUR62023238 Chenopodium quinoa HOM05D006437 ORTHO05D007973 4.0e-29 131.0 74 79.7
Hma1.2p1_0832F.1_g225650 Hydrangea macrophylla HOM05D006437 ORTHO05D007973 6.9e-29 130.2 73 76.7
Aqoxy7G00638 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 2.6e-28 128.3 75 72.0
AUR62023191 Chenopodium quinoa HOM05D006437 ORTHO05D007973 2.6e-28 128.3 74 77.0
FAN27G3274 Fragaria x ananassa HOM05D006437 ORTHO05D007973 7.6e-28 126.7 69 82.6
Zm00001eb158640 Zea mays HOM05D006437 ORTHO05D007973 1.3e-27 125.9 72 76.4
BcaC05g30279 Brassica carinata HOM05D006437 ORTHO05D007973 2.2e-27 125.2 72 79.2
THA.LOC104820840 Tarenaya hassleriana HOM05D006437 ORTHO05D007973 2.2e-27 125.2 72 76.4
FAN15G1984 Fragaria x ananassa HOM05D006437 ORTHO05D007973 2.9e-27 124.8 69 81.2
FvH4_5g32381 Fragaria vesca HOM05D006437 ORTHO05D007973 3.8e-27 124.4 66 84.8
Os01g0644200 Oryza sativa ssp. japonica HOM05D006437 ORTHO05D007973 4.9e-27 124.0 72 73.6
Potri.017G128600 Populus trichocarpa HOM05D006437 ORTHO05D007973 8.4e-27 123.2 75 74.7
RcHm_v2.0_Chr1g0370661 Rosa chinensis HOM05D006437 ORTHO05D007973 1.4e-26 122.5 75 76.0
AL3G12980 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 75.0
AT3G03341 Arabidopsis thaliana HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 75.0
BcaC09g47742 Brassica carinata HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 76.4
A06p26360 Brassica napus HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 76.4
BNapus_Darmor_BZH_scaffold_162p00120 Brassica napus HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 76.4
BNapus_Darmor_BZH_scaffold_78p00110 Brassica napus HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 76.4
BolC1t05835H Brassica oleracea HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 76.4
Carub.0003s0252 Capsella rubella HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 75.0
CARHR077390 Cardamine hirsuta HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 75.0
Thhalv10022211m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 2.5e-26 121.7 72 75.0
Mapoly0046s0059 Marchantia polymorpha HOM05D006437 ORTHO05D007973 2.5e-26 121.7 72 66.7
Pp3c24_9690 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.5e-26 121.7 72 70.8
Sp3g02370 Schrenkiella parvula HOM05D006437 ORTHO05D007973 2.5e-26 121.7 72 75.0
BcaC09g47741 Brassica carinata HOM05D006437 ORTHO05D007973 1.2e-25 119.4 72 75.0
AUR62023192 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.2e-25 119.4 73 68.5
DCAR_015248 Daucus carota HOM05D006437 ORTHO05D007973 1.2e-25 119.4 70 74.3
BcaC04g18789 Brassica carinata HOM05D006437 ORTHO05D007973 1.6e-25 119.0 74 68.9
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 1.6e-25 119.0 62 82.3
CsaV3_1G027840 Cucumis sativus L. HOM05D006437 ORTHO05D007973 2.1e-25 118.6 69 72.5
CsaV3_3G021640 Cucumis sativus L. HOM05D006437 ORTHO05D007973 2.1e-25 118.6 69 72.5
BraA01t04584Z Brassica rapa HOM05D006437 ORTHO05D007973 2.7e-25 118.2 72 75.0
AUR62023239 Chenopodium quinoa HOM05D006437 ORTHO05D007973 2.7e-25 118.2 73 67.1
Thhalv10015148m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 1.3e-24 115.9 71 69.0
Peaxi162Scf00118g00018 Petunia axillaris HOM05D006437 ORTHO05D007973 1.8e-24 115.5 62 82.3
Pp3c8_12730 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.3e-24 115.2 72 65.3
Pp3c8_12731 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.3e-24 115.2 72 65.3
Mapoly0046s0058 Marchantia polymorpha HOM05D006437 ORTHO05D007973 3.0e-24 114.8 72 70.8
Carub.0006s1569 Capsella rubella HOM05D006437 ORTHO05D007973 3.9e-24 114.4 74 64.9
CARHR195740 Cardamine hirsuta HOM05D006437 ORTHO05D007973 5.1e-24 114.0 74 64.9
AL288U10020 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 6.7e-24 113.6 72 72.2
AL6G28540 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 6.7e-24 113.6 71 66.2
MELO3C020291.2 Cucumis melo HOM05D006437 ORTHO05D007973 1.5e-23 112.5 76 68.4
SMO111G0099 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.5e-23 112.5 72 69.4
Prupe.3G158900 Prunus persica HOM05D006437 ORTHO05D007973 2.5e-23 111.7 66 75.8
A10p21920 Brassica napus HOM05D006437 ORTHO05D007973 4.3e-23 110.9 67 70.1
C09p59670 Brassica napus HOM05D006437 ORTHO05D007973 7.4e-23 110.2 66 71.2
BolC9t58806H Brassica oleracea HOM05D006437 ORTHO05D007973 7.4e-23 110.2 66 71.2
BraA10t44251Z Brassica rapa HOM05D006437 ORTHO05D007973 7.4e-23 110.2 66 71.2
Pp3c19_5460 Physcomitrium patens HOM05D006437 ORTHO05D007973 7.4e-23 110.2 74 63.5
Pp3c19_5500 Physcomitrium patens HOM05D006437 ORTHO05D007973 7.4e-23 110.2 74 63.5
Pp3c21_13210 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.6e-22 109.0 74 62.2
Pp3c4_12160 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.8e-22 108.2 77 57.1
PSO017G3771 Papaver somniferum HOM05D006437 ORTHO05D007973 3.7e-22 107.8 69 65.2
PSO478G0303 Papaver somniferum HOM05D006437 ORTHO05D007973 3.7e-22 107.8 69 65.2
Pp3c23_9530 Physcomitrium patens HOM05D006437 ORTHO05D007973 4.8e-22 107.5 74 62.2
SMO111G0160 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 4.8e-22 107.5 72 65.3
SMO111G0173 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 4.8e-22 107.5 72 65.3
SMO293G0011 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 4.8e-22 107.5 72 65.3
SEGI_27045 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 1.4e-21 105.9 69 63.8
Pp3c19_9840 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.4e-21 105.1 74 60.8
SMO111G0149 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 4.1e-21 104.4 72 62.5
SEGI_20637 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 5.3e-21 104.0 69 62.3
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 2.0e-20 102.1 63 66.7
Aqoxy7G00636 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 2.6e-20 101.7 63 68.3
Mapoly0009s0147 Marchantia polymorpha HOM05D006437 ORTHO05D007973 2.6e-20 101.7 74 55.4
TAR371G0835 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.2e-19 98.6 49 83.7
TAR371G0317 Trochodendron aralioides HOM05D006437 ORTHO05D007973 7.2e-18 93.6 48 81.2
Rhsim08G0086000 Rhododendron simsii HOM05D006437 ORTHO05D007973 2.7e-17 91.7 74 60.8
SEGI_23307 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 2.7e-17 91.7 58 72.4
Cre13.g575701 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 7.9e-09 63.5 70 44.3
Cre03.g207100 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 3.9e-08 61.2 77 36.4
Cre03.g207152 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 1.1e-07 59.7 70 41.4
TAR371G0913 Trochodendron aralioides HOM05D006437 ORTHO05D007973 4.4e-07 57.8 29 75.9
TAR371G0323 Trochodendron aralioides HOM05D006437 ORTHO05D007973 9.7e-07 56.6 28 75.0


User provided reference genes

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