Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.3e-131 473.0 236 100.0
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.8e-104 382.9 226 80.5
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 6.9e-104 380.9 238 81.1
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 6.9e-104 380.9 236 80.1
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 2.7e-100 369.0 239 77.0
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.8e-97 359.0 238 74.8
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.8e-96 356.3 222 75.2
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 1.2e-95 353.6 219 79.5
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 6.0e-92 341.3 231 71.9
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.1e-85 317.8 236 69.1
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.9e-82 309.7 167 84.4
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.3e-81 307.0 236 60.6
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 2.2e-81 306.2 224 63.4
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 4.8e-81 305.1 222 63.5
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 4.8e-81 305.1 238 60.5
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.4e-80 303.5 208 65.4
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.4e-80 302.8 216 65.7
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 5.3e-80 301.6 223 63.2
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.2e-79 300.4 208 63.9
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 7.7e-79 297.7 236 60.6
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 7.7e-79 297.7 215 63.7
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.0e-78 297.4 223 61.4
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.3e-78 297.0 217 61.3
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.9e-78 295.8 212 64.2
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 6.5e-78 294.7 213 61.5
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 6.5e-78 294.7 223 60.1
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.1e-77 293.9 216 62.5
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 3.2e-77 292.4 215 62.3
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.1e-76 289.7 237 57.4
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 2.7e-76 289.3 225 61.3
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 2.7e-76 289.3 236 58.1
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 2.7e-76 289.3 223 61.9
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.6e-76 288.9 214 61.2
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 4.6e-76 288.5 218 62.4
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 4.6e-76 288.5 249 55.0
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 7.9e-76 287.7 227 58.1
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.3e-75 286.2 214 60.3
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 2.3e-75 286.2 234 59.4
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 3.0e-75 285.8 215 62.8
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 3.9e-75 285.4 212 59.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 6.7e-75 284.6 216 61.6
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 8.8e-75 284.3 223 59.2
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 8.8e-75 284.3 214 60.3
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.5e-74 283.5 222 60.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.5e-74 282.7 213 59.2
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 5.7e-74 281.6 215 58.1
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 7.4e-74 281.2 212 60.4
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 2.2e-73 279.6 218 61.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 1.1e-72 277.3 213 58.7
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.8e-72 276.6 190 65.8
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.1e-72 275.4 219 57.1
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 5.3e-72 275.0 210 59.0
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 5.3e-72 275.0 213 58.7
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.2e-71 273.9 212 58.5
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.2e-71 273.9 228 59.2
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.2e-70 269.6 212 58.0
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.2e-70 269.6 212 54.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.2e-70 269.6 212 54.2
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 6.5e-70 268.1 212 54.2
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.1e-69 267.3 211 55.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.4e-69 266.9 236 55.5
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 3.6e-68 262.3 212 51.4
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 6.1e-68 261.5 216 53.2
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.0e-67 260.8 217 54.4
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.4e-67 260.4 210 55.2
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.3e-67 259.6 210 56.2
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.3e-67 259.6 222 55.0
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.9e-67 258.8 214 56.5
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.7e-67 258.1 246 53.7
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.0e-66 256.5 223 52.5
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.0e-66 256.5 223 52.0
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 5.7e-66 255.0 231 52.4
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 7.4e-66 254.6 223 52.9
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 9.7e-66 254.2 210 52.9
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 9.7e-66 254.2 210 56.7
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-65 253.8 210 54.8
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.7e-65 253.4 211 53.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.7e-65 253.4 209 53.1
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.8e-65 252.7 210 55.2
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 3.7e-65 252.3 211 55.0
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.7e-65 252.3 221 56.1
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.8e-65 251.9 236 51.3
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 6.3e-65 251.5 210 54.8
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 6.3e-65 251.5 177 65.5
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.4e-64 250.4 220 52.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.4e-64 250.4 216 55.6
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 3.1e-64 249.2 210 54.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 5.3e-64 248.4 212 53.8
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-63 247.3 210 53.8
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.5e-63 246.9 213 54.5
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 3.5e-63 245.7 210 53.3
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.0e-62 244.2 231 49.8
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.0e-62 244.2 231 49.8
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.3e-62 243.8 197 55.8
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.7e-62 243.4 231 49.4
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 5.0e-62 241.9 199 54.3
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 5.0e-62 241.9 207 53.6
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.5e-61 240.4 211 53.1
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.5e-61 239.6 234 48.3
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.2e-61 238.8 236 57.2
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.1e-60 236.5 190 54.2
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.1e-60 235.0 235 48.9
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.2e-59 231.9 233 56.7
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-58 230.7 186 55.4
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.0e-58 229.9 197 52.8
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 4.4e-58 228.8 174 60.3
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.7e-58 228.4 235 53.6
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.3e-57 227.3 211 49.3
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.3e-57 227.3 218 50.9
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.1e-56 224.2 206 51.5
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-56 223.8 236 47.5
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.8e-56 223.4 197 51.8
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 2.0e-55 219.9 200 56.5
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 5.9e-55 218.4 209 47.4
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 7.7e-55 218.0 236 48.7
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 5.0e-54 215.3 164 59.8
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.1e-52 209.9 191 50.3
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 1.4e-51 207.2 108 87.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.3e-51 206.5 215 48.8
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.2e-50 204.1 240 44.2
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.5e-50 203.8 178 51.7
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.0e-47 193.4 264 45.1
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 7.7e-47 191.4 133 63.2
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.1e-45 187.6 256 40.6
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 7.2e-45 184.9 209 43.1
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 6.1e-44 181.8 196 40.8
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.0e-42 176.8 146 60.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.2e-41 173.3 140 52.9
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.8e-40 170.2 208 43.3
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 4.1e-40 169.1 184 46.7
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.7e-28 129.0 107 57.9
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.8e-27 127.1 162 40.7
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.3e-25 120.9 96 51.0
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 8.6e-22 108.2 70 61.4
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 4.3e-21 105.9 91 58.2
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.6e-20 104.0 91 59.3
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 3.4e-18 96.3 62 59.7
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 4.4e-18 95.9 58 67.2
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 5.8e-18 95.5 99 46.5
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.4e-16 90.9 52 69.2
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 5.4e-16 89.0 82 56.1
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.3e-14 84.3 76 56.6
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.9e-13 80.5 53 58.5
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.5e-13 80.1 132 43.2
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 8.1e-12 75.1 64 45.3
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.8e-11 73.9 79 49.4
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 8.9e-11 71.6 135 34.1
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.0e-10 70.5 50 62.0
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.3e-09 67.8 39 66.7
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.3e-09 67.8 70 47.1
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 1.1e-08 64.7 159 30.8
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 5.4e-08 62.4 51 51.0
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.3e-06 57.8 52 57.7
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 8.6e-06 55.1 26 76.9


User provided reference genes

Program Settings