Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 7.2e-178 627.1 309 100.0
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 7.2e-178 627.1 309 100.0
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 9.8e-159 563.5 310 88.4
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 2.3e-147 525.8 310 86.5
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 4.3e-138 495.0 310 77.7
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 5.2e-136 488.0 310 76.1
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 2.2e-134 482.6 306 75.2
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.4e-133 479.9 310 76.5
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 9.2e-133 477.2 308 76.3
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.2e-132 476.9 311 74.3
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 6.6e-131 471.1 312 73.4
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 2.0e-127 459.5 310 73.9
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 5.4e-125 451.4 311 73.3
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 4.6e-124 448.4 310 70.6
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 4.6e-124 448.4 310 70.6
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.1e-106 390.6 303 65.0
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 2.1e-105 386.3 301 63.1
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.2e-103 380.6 305 62.0
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 2.6e-103 379.4 306 60.8
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.4e-103 379.0 306 60.8
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 5.8e-103 378.3 306 60.5
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.1e-101 374.0 303 62.4
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.2e-100 370.5 294 62.6
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 4.6e-100 368.6 325 59.1
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 6.0e-100 368.2 328 56.7
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 7.9e-100 367.9 306 59.5
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.0e-99 367.5 304 59.5
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 7.4e-98 361.3 298 61.7
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.3e-97 360.5 291 62.2
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.8e-97 358.6 299 61.2
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-96 357.5 301 60.5
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.4e-96 357.1 301 60.5
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.4e-96 357.1 301 58.8
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.8e-96 356.7 304 57.2
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 2.0e-95 353.2 300 59.3
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 2.0e-95 353.2 302 57.6
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.0e-95 353.2 304 57.2
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.6e-95 352.8 301 59.8
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 2.6e-95 352.8 304 55.9
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.5e-95 352.1 304 57.2
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 1.0e-94 350.9 282 61.0
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 5.0e-94 348.6 304 56.6
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 6.5e-94 348.2 295 60.0
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.9e-93 346.7 276 60.5
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 3.2e-93 345.9 300 55.7
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 3.2e-93 345.9 304 55.9
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 7.2e-93 344.7 301 58.5
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 1.2e-92 344.0 307 55.4
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 3.5e-92 342.4 306 55.2
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 3.9e-91 339.0 302 55.0
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 6.7e-91 338.2 308 55.5
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 8.7e-91 337.8 294 57.1
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 9.7e-90 334.3 303 56.4
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.3e-89 334.0 296 56.1
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 2.8e-89 332.8 291 56.7
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 6.3e-89 331.6 307 54.4
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 2.4e-88 329.7 306 53.3
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.5e-87 327.0 307 53.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 4.5e-87 325.5 306 54.9
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 4.2e-85 318.9 289 54.3
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 7.9e-84 314.7 301 53.5
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.8e-83 313.5 298 52.7
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 2.3e-83 313.2 301 52.5
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 3.0e-83 312.8 294 54.1
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 3.0e-83 312.8 294 54.1
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.0e-83 312.8 294 53.4
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 2.0e-82 310.1 298 53.0
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 4.3e-82 308.9 274 58.0
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-81 307.4 294 52.7
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.7e-81 307.0 289 54.3
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 8.2e-81 304.7 294 53.1
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 8.2e-81 304.7 288 53.5
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 8.2e-81 304.7 337 50.1
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.1e-80 304.3 304 52.3
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.4e-80 303.9 350 48.3
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 5.3e-80 302.0 294 51.7
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 5.3e-80 302.0 299 50.5
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.9e-80 301.6 302 52.3
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 9.1e-80 301.2 308 52.3
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.5e-79 300.4 275 54.2
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 4.5e-79 298.9 251 61.8
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 1.3e-78 297.4 284 54.6
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.7e-78 297.0 288 52.4
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 6.5e-78 295.0 276 53.6
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.2e-76 290.8 271 53.9
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 6.1e-76 288.5 299 49.8
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 7.9e-76 288.1 287 51.6
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.0e-75 287.7 293 48.8
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.4e-75 287.3 294 51.7
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.0e-75 286.2 295 51.9
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 8.8e-75 284.6 269 54.6
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 1.1e-74 284.3 275 54.2
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 5.7e-74 282.0 288 49.0
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 9.7e-74 281.2 220 60.9
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.7e-73 279.3 250 54.8
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 5.3e-72 275.4 308 49.7
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 9.1e-72 274.6 293 50.9
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.6e-71 273.1 292 51.0
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 6.5e-70 268.5 214 62.1
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 8.5e-70 268.1 220 59.5
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.7e-68 263.1 294 48.3
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 6.1e-68 261.9 279 50.2
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 8.8e-67 258.1 316 44.0
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.3e-65 254.2 213 57.7
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 1.7e-65 253.8 301 47.5
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 6.3e-65 251.9 218 55.5
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 1.8e-64 250.4 213 54.9
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 4.1e-64 249.2 203 63.1
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.3e-64 248.8 298 44.6
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 5.0e-62 242.3 301 43.5
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.5e-61 240.7 235 53.2
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.2e-60 237.7 293 45.4
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 9.8e-58 228.0 209 57.4
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 2.8e-57 226.5 237 53.6
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.8e-56 223.8 288 43.8
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 4.2e-53 212.6 295 42.4
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 3.0e-51 206.5 213 47.9
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 4.0e-51 206.1 302 36.8
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 8.8e-51 204.9 187 54.0
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 3.4e-50 203.0 176 59.7
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.7e-49 200.7 188 50.5
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 2.4e-48 196.8 300 38.3
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.5e-45 187.6 288 40.6
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.9e-45 187.2 290 37.9
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 6.1e-44 182.2 291 37.8
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 4.0e-43 179.5 160 56.9
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 2.2e-41 173.7 245 44.1
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 9.2e-40 168.3 155 55.5
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.2e-39 167.9 119 71.4
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.0e-38 164.9 111 71.2
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 1.2e-36 157.9 140 55.0
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 2.0e-34 150.6 250 38.8
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.7e-33 147.5 104 66.3
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.4e-33 145.6 131 55.0
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.7e-25 120.9 172 37.8
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 2.8e-20 103.6 253 30.0
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 8.9e-19 98.6 345 25.8
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 8.9e-19 98.6 107 47.7
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 2.9e-17 93.6 112 44.6
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 2.7e-15 87.0 102 48.0
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.0e-14 85.1 110 44.5
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 1.7e-14 84.3 198 31.8
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 1.9e-13 80.9 83 47.0
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 4.7e-12 76.3 61 57.4
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 5.2e-11 72.8 258 27.1
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.2e-10 71.6 58 60.3
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 9.9e-10 68.6 280 25.0
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 9.9e-10 68.6 59 50.8
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 1.3e-09 68.2 236 26.3
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 3.8e-09 66.6 165 29.1
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 3.8e-09 66.6 253 24.1
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.9e-08 64.3 248 25.0
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 3.2e-08 63.5 155 27.1
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 1.6e-07 61.2 61 54.1
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 1.6e-07 61.2 61 54.1
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 2.1e-07 60.8 267 24.3
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 2.1e-07 60.8 176 27.3
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.1e-07 60.8 214 24.8
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 2.7e-07 60.5 246 24.8
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 2.7e-07 60.5 181 26.0
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 3.5e-07 60.1 246 22.8
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 4.6e-07 59.7 150 27.3
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 4.6e-07 59.7 150 27.3
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 4.6e-07 59.7 150 27.3
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 7.8e-07 58.9 178 25.3
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 7.8e-07 58.9 155 25.2
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 1.0e-06 58.5 178 24.7
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 1.0e-06 58.5 155 24.5
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.3e-06 58.2 180 23.3
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 1.3e-06 58.2 178 21.9
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.3e-06 58.2 155 27.7
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 1.3e-06 58.2 212 25.0
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 1.7e-06 57.8 158 26.6
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 2.3e-06 57.4 250 23.6
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 3.0e-06 57.0 163 26.4
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 3.9e-06 56.6 224 23.7
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 3.9e-06 56.6 181 25.4
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 5.1e-06 56.2 178 24.7
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 5.1e-06 56.2 155 23.9
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 5.1e-06 56.2 141 29.1
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 6.6e-06 55.8 177 25.4
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 6.6e-06 55.8 190 25.8
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 8.7e-06 55.5 185 23.8
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 8.7e-06 55.5 178 24.7
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 8.7e-06 55.5 155 23.9


User provided reference genes

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