Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 5.5e-56 220.7 109 100.0
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 3.9e-54 214.5 109 98.2
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 5.9e-42 174.1 111 80.2
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-40 168.3 110 77.3
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 3.2e-40 168.3 109 78.9
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.2e-40 167.9 110 77.3
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 7.2e-40 167.2 110 77.3
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 7.2e-40 167.2 110 76.4
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-39 166.4 109 77.1
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 2.7e-39 165.2 111 77.5
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 3.6e-39 164.9 104 80.8
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 8.0e-39 163.7 108 75.9
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 1.8e-38 162.5 102 77.5
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.8e-38 162.5 102 77.5
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 4.0e-38 161.4 105 77.1
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 8.8e-38 160.2 107 73.8
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 3.3e-37 158.3 102 75.5
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.7e-36 156.0 109 69.7
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.3e-35 151.0 103 72.8
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 5.3e-35 151.0 105 72.4
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 7.0e-35 150.6 109 67.9
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 3.5e-34 148.3 136 59.6
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 7.7e-34 147.1 109 67.0
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.0e-33 146.7 109 67.9
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.2e-33 145.6 109 65.1
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 5.0e-33 144.4 102 69.6
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.1e-32 143.3 109 68.8
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.1e-32 143.3 106 64.2
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.5e-32 142.9 106 64.2
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.5e-32 142.9 109 67.9
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.9e-32 142.5 109 63.3
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 4.2e-32 141.4 109 67.9
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 7.2e-32 140.6 109 64.2
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 7.2e-32 140.6 119 61.3
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 9.4e-32 140.2 106 63.2
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 2.1e-31 139.0 109 63.3
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.1e-31 139.0 106 65.1
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.7e-31 138.7 95 74.7
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 2.7e-31 138.7 107 62.6
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 3.6e-31 138.3 101 66.3
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 6.1e-31 137.5 102 63.7
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 8.0e-31 137.1 109 62.4
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 8.0e-31 137.1 107 61.7
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 1.4e-30 136.3 109 62.4
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.8e-30 136.0 109 63.3
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 2.3e-30 135.6 107 61.7
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 3.0e-30 135.2 97 69.1
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.0e-30 135.2 107 61.7
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.0e-30 134.8 103 63.1
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 5.2e-30 134.4 109 64.2
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 8.8e-30 133.7 109 58.7
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.8e-30 133.7 109 62.4
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.8e-30 133.7 109 62.4
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 1.2e-29 133.3 101 65.3
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.0e-29 132.5 101 65.3
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 2.0e-29 132.5 109 62.4
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 3.4e-29 131.7 109 61.5
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 3.4e-29 131.7 117 58.1
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 5.7e-29 131.0 95 65.3
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 2.2e-28 129.0 109 61.5
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 3.7e-28 128.3 97 66.0
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 4.8e-28 127.9 110 63.6
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 6.3e-28 127.5 109 56.9
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 8.3e-28 127.1 113 56.6
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 8.3e-28 127.1 109 58.7
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.1e-27 126.7 109 57.8
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.1e-27 126.7 109 57.8
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.4e-27 126.3 110 61.8
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-27 126.3 92 66.3
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-27 126.3 92 66.3
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.8e-27 125.9 92 65.2
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.8e-27 125.9 108 55.6
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.4e-27 125.6 95 67.4
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 5.4e-27 124.4 107 55.1
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-26 123.2 91 64.8
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-26 123.2 91 64.8
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 1.6e-26 122.9 109 59.6
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 2.0e-26 122.5 107 57.9
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 3.5e-26 121.7 110 60.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.7e-26 120.6 98 63.3
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 7.7e-26 120.6 160 42.5
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 1.3e-25 119.8 103 57.3
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-24 116.7 69 85.5
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.1e-24 116.7 109 56.9
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.9e-24 115.9 102 54.9
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.5e-24 115.5 104 60.6
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.3e-24 115.2 109 57.8
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 4.2e-24 114.8 92 58.7
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.5e-24 114.4 97 64.9
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 5.5e-24 114.4 85 67.1
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 7.2e-24 114.0 92 63.0
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 7.2e-24 114.0 109 54.1
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 9.5e-24 113.6 103 55.3
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.6e-23 112.8 106 54.7
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 2.1e-23 112.5 99 60.6
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 3.6e-23 111.7 104 58.7
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.6e-23 111.7 82 64.6
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.8e-22 109.4 129 49.6
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.3e-22 109.0 97 58.8
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 4.0e-22 108.2 99 64.6
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 4.0e-22 108.2 65 81.5
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 5.2e-22 107.8 92 58.7
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 5.2e-22 107.8 104 53.8
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 6.8e-22 107.5 105 54.3
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 8.9e-22 107.1 105 52.4
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 5.7e-21 104.4 108 58.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 7.5e-21 104.0 93 60.2
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.7e-20 102.8 94 57.4
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 1.4e-19 99.8 109 53.2
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 2.4e-19 99.0 93 57.0
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.4e-19 99.0 108 54.6
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 4.1e-19 98.2 82 59.8
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 5.4e-19 97.8 78 65.4
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 7.0e-19 97.4 106 52.8
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 7.0e-19 97.4 108 51.9
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 7.0e-19 97.4 100 53.0
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.6e-18 96.3 113 50.4
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.6e-18 96.3 108 52.8
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.6e-18 96.3 103 51.5
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-18 95.9 86 64.0
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 2.7e-18 95.5 118 49.2
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 1.0e-17 93.6 106 52.8
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 3.8e-17 91.7 101 46.5
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 6.6e-17 90.9 105 52.4
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 4.3e-16 88.2 80 58.8
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.8e-14 82.8 101 45.5
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.0e-14 82.0 79 59.5
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 4.0e-14 81.6 108 49.1
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.2e-14 81.3 63 63.5
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 5.2e-14 81.3 67 61.2
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 5.2e-14 81.3 95 45.3
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 1.2e-13 80.1 69 58.0
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 3.4e-13 78.6 81 51.9
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 4.4e-13 78.2 99 50.5
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.7e-12 76.3 97 43.3
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 4.1e-11 71.6 92 41.3
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.7e-09 66.2 39 87.2
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.7e-09 66.2 39 87.2
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.9e-08 62.8 43 69.8
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.5e-08 60.5 85 45.9


User provided reference genes

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