Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 0.0e+00 1182.2 704 100.0
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 3.9e-187 659.1 742 65.2
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.6e-185 653.7 744 61.8
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.1e-181 641.0 740 61.9
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 7.2e-165 585.1 740 59.1
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 8.8e-147 525.0 748 52.1
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 4.7e-132 476.1 769 55.9
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.8e-131 474.2 712 54.2
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.0e-131 473.4 744 51.3
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 6.3e-129 465.7 715 54.0
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 7.7e-127 458.8 655 55.0
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 9.8e-122 441.8 629 52.6
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.1e-120 438.3 783 49.2
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.6e-119 434.5 791 48.7
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.1e-117 428.3 719 47.1
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 4.7e-116 422.9 737 46.0
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 4.9e-113 412.9 704 50.0
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 8.6e-110 402.1 771 45.5
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 6.8e-107 392.5 670 53.7
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 4.4e-106 389.8 788 49.9
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 8.3e-105 385.6 671 46.9
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.4e-104 384.0 762 43.6
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.6e-103 381.3 663 50.8
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 6.0e-103 379.4 747 45.4
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.1e-100 370.9 773 47.6
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 6.8e-99 365.9 663 48.0
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 3.4e-98 363.6 737 44.1
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.4e-96 356.3 794 42.4
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.7e-94 351.3 759 46.6
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 5.1e-94 349.7 773 40.9
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 8.6e-94 349.0 669 45.0
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.5e-93 348.2 705 46.5
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.9e-93 347.8 750 42.4
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.5e-93 347.4 696 48.3
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 9.6e-93 345.5 737 49.5
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 4.0e-91 340.1 757 43.2
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.0e-90 337.8 768 44.4
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.6e-90 337.4 743 45.1
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 7.6e-90 335.9 682 45.9
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.2e-89 334.3 741 43.5
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.2e-89 334.3 741 43.5
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 6.4e-89 332.8 743 43.1
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.4e-88 331.6 778 44.3
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.7e-87 327.4 743 42.8
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.0e-86 325.5 759 43.9
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.3e-86 325.1 789 41.2
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.3e-86 324.3 681 46.5
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 3.0e-86 323.9 784 41.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 5.1e-86 323.2 787 40.2
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.0e-83 313.5 785 39.4
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 9.0e-83 312.4 686 46.1
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 4.6e-79 300.1 797 46.3
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-78 298.1 661 44.0
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 3.0e-78 297.4 686 42.1
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 5.1e-78 296.6 783 41.8
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 4.0e-75 287.0 291 60.5
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.2e-74 285.4 760 42.8
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.6e-74 284.3 721 42.4
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 9.9e-74 282.3 748 38.8
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.8e-73 280.4 725 47.0
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 8.4e-73 279.3 729 42.7
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.2e-72 276.9 740 39.6
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.7e-71 274.2 755 38.3
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 7.9e-71 272.7 688 43.3
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.8e-70 271.6 685 42.6
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 2.5e-69 267.7 713 40.3
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.8e-68 264.2 648 42.7
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 9.0e-67 259.2 616 38.0
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.9e-65 254.2 719 40.9
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.9e-65 254.2 726 37.7
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.5e-64 251.1 655 42.0
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 9.3e-64 249.2 726 42.4
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 6.0e-63 246.5 684 41.2
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.3e-62 244.6 737 34.3
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 3.3e-61 240.7 748 39.7
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 5.7e-61 240.0 728 36.4
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 2.1e-60 238.0 439 57.6
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 9.0e-59 232.6 673 39.7
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.2e-58 232.3 688 35.8
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 5.8e-58 229.9 590 37.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 5.8e-58 229.9 650 37.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.7e-57 228.4 622 37.9
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 3.2e-56 224.2 695 36.8
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 4.2e-56 223.8 631 38.5
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 7.1e-56 223.0 422 41.9
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 9.3e-56 222.6 695 36.1
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 9.3e-56 222.6 745 39.6
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.6e-55 220.3 631 45.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.0e-54 219.2 691 38.6
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.1e-53 215.7 668 39.4
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 9.7e-53 212.6 795 37.0
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 9.7e-53 212.6 686 37.3
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.6e-52 211.8 294 50.3
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 3.7e-52 210.7 697 40.9
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.4e-51 208.8 734 40.7
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.4e-51 208.0 670 38.7
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 4.1e-51 207.2 650 32.5
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.0e-50 204.9 737 38.4
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 7.2e-48 196.4 710 30.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 5.1e-46 190.3 710 37.6
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 2.5e-45 188.0 686 32.5
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 7.4e-45 186.4 776 31.7
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 6.3e-44 183.3 680 39.7
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.1e-43 182.6 750 32.0
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.4e-43 182.2 761 31.4
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.8e-43 181.8 266 50.0
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 4.1e-43 180.6 659 33.1
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.1e-43 179.5 683 36.9
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 9.1e-43 179.5 728 31.7
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.2e-42 179.1 728 31.6
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.0e-42 178.3 749 30.8
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 4.5e-42 177.2 694 35.6
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 4.5e-42 177.2 674 39.6
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.3e-41 175.6 680 32.9
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.9e-41 174.5 723 31.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.0e-41 173.7 257 47.5
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 6.5e-41 173.3 456 40.1
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.4e-40 172.2 153 64.7
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.2e-40 171.0 672 31.0
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 9.4e-40 169.5 663 32.3
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-39 169.1 678 38.5
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.7e-39 167.2 612 35.9
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.7e-39 167.2 566 37.6
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.8e-38 165.2 706 38.2
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.8e-38 165.2 612 34.3
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.5e-37 162.2 689 35.7
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 7.4e-37 159.8 609 37.1
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 3.1e-35 154.5 99 82.8
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 9.1e-35 152.9 691 30.4
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.9e-34 150.2 615 32.8
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.3e-33 149.1 562 33.1
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.7e-33 148.7 619 35.4
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.2e-33 148.3 523 34.2
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.5e-32 145.6 665 40.0
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.2e-31 142.5 201 49.3
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.2e-31 142.5 559 31.7
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.6e-31 142.1 388 36.1
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 8.0e-31 139.8 599 30.9
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.8e-30 138.7 617 33.1
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.5e-29 135.6 517 33.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 9.7e-29 132.9 567 30.9
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 6.3e-28 130.2 377 51.2
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.5e-26 124.4 432 40.7
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.5e-24 118.2 705 26.8
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.5e-21 109.0 655 26.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.3e-20 105.9 708 31.9
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 6.3e-20 103.6 542 32.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-19 102.8 197 40.6
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 3.5e-18 97.8 140 52.1
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 5.0e-17 94.0 141 48.2
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 1.1e-16 92.8 130 45.4
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.6e-15 89.0 170 39.4
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 4.0e-14 84.3 148 46.6
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 8.8e-14 83.2 511 29.4
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 8.8e-14 83.2 511 29.4
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.5e-13 82.4 509 29.5
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.0e-13 82.0 120 49.2
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 5.7e-13 80.5 318 32.7
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.3e-12 79.3 508 34.8
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.7e-12 79.0 207 33.3
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.8e-12 78.2 236 31.4
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 2.8e-12 78.2 513 28.5
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.8e-12 78.2 576 30.7
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 4.9e-12 77.4 65 66.2
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 2.4e-11 75.1 80 61.2
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 5.4e-11 73.9 233 33.0
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 7.0e-11 73.6 65 63.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.7e-10 71.6 223 34.1
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 5.0e-09 67.4 94 51.1
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 3.0e-06 58.2 533 28.9


User provided reference genes

Program Settings