Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 9.7e-68 260.4 129 100.0
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 1.9e-55 219.5 129 85.3
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 5.8e-28 128.3 129 59.7
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 1.9e-26 123.2 129 55.0
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 7.0e-26 121.3 132 53.8
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 9.2e-26 120.9 132 56.1
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 3.5e-25 119.0 129 55.8
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 1.0e-24 117.5 132 51.5
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 1.7e-24 116.7 129 52.7
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.3e-24 116.3 129 55.0
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 3.9e-24 115.5 135 57.0
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 3.9e-24 115.5 129 51.9
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 8.6e-24 114.4 129 54.3
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.5e-23 113.6 129 54.3
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.5e-23 113.6 129 54.3
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 1.9e-23 113.2 135 57.0
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 2.5e-23 112.8 129 52.7
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.5e-23 112.8 129 52.7
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 8.0e-22 107.8 135 51.1
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 1.8e-21 106.7 134 52.2
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 8.9e-21 104.4 134 50.0
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 3.4e-20 102.4 124 54.0
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 2.2e-19 99.8 118 49.2
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 2.4e-18 96.3 138 47.8
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 5.4e-18 95.1 126 46.8
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 5.4e-18 95.1 136 45.6
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.2e-17 94.0 133 45.9
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 1.0e-16 90.9 139 43.9
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.0e-16 90.9 135 44.4
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 3.0e-16 89.4 133 46.6
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 3.9e-16 89.0 134 47.8
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 5.1e-16 88.6 135 46.7
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 5.1e-16 88.6 135 46.7
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 5.1e-16 88.6 127 48.0
Haze_09713 Corylus avellana HOM05D004357 ORTHO05D005064 8.6e-16 87.8 135 44.4
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 1.1e-15 87.4 130 44.6
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 1.5e-15 87.0 130 41.5
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 2.5e-15 86.3 121 47.9
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 7.3e-15 84.7 130 44.6
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.8e-14 82.8 121 43.8
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 3.6e-14 82.4 130 44.6
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 3.6e-14 82.4 133 42.9
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 4.7e-14 82.0 123 43.9
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 6.2e-14 81.6 72 58.3
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 6.2e-14 81.6 126 42.9
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 8.1e-14 81.3 71 60.6
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 8.1e-14 81.3 74 56.8
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 8.1e-14 81.3 129 42.6
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 8.1e-14 81.3 129 42.6
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 1.1e-13 80.9 73 57.5
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 1.1e-13 80.9 131 45.0
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 1.8e-13 80.1 129 41.9
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.8e-13 80.1 82 53.7
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 2.3e-13 79.7 126 42.9
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 2.3e-13 79.7 74 58.1
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 4.0e-13 79.0 122 44.3
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 5.2e-13 78.6 125 44.0
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 5.2e-13 78.6 80 52.5
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 6.8e-13 78.2 126 43.7
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 8.9e-13 77.8 82 52.4
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 8.9e-13 77.8 123 41.5
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 8.9e-13 77.8 121 42.1
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 8.9e-13 77.8 129 42.6
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 1.2e-12 77.4 127 42.5
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 1.2e-12 77.4 129 39.5
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 2.6e-12 76.3 76 53.9
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 2.6e-12 76.3 73 54.8
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 2.6e-12 76.3 108 45.4
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 3.4e-12 75.9 135 39.3
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 4.4e-12 75.5 131 41.2
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 5.8e-12 75.1 108 40.7
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 1.3e-11 73.9 129 40.3
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 3.7e-11 72.4 71 49.3
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 3.7e-11 72.4 71 49.3
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 3.7e-11 72.4 71 49.3
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 3.7e-11 72.4 71 49.3
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 3.7e-11 72.4 130 41.5
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 3.7e-11 72.4 132 37.9
arahy.Tifrunner.gnm1.ann1.N0IC2B Arachis hypogaea HOM05D004357 ORTHO05D005064 4.9e-11 72.0 110 45.5
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 4.9e-11 72.0 129 43.4
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 4.9e-11 72.0 124 39.5
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 4.9e-11 72.0 121 38.8
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 8.3e-11 71.2 95 43.2
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.1e-10 70.9 132 37.1
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.1e-10 70.9 133 37.6
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 1.1e-10 70.9 132 38.6
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.4e-10 70.5 125 39.2
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 1.4e-10 70.5 125 39.2
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.9e-10 70.1 76 48.7
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 3.2e-10 69.3 81 51.9
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 3.2e-10 69.3 133 38.3
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 3.2e-10 69.3 134 36.6
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 4.1e-10 68.9 71 47.9
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 7.1e-10 68.2 74 56.8
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 7.1e-10 68.2 131 38.9
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 7.1e-10 68.2 131 38.9
arahy.Tifrunner.gnm1.ann1.FD90PG Arachis hypogaea HOM05D004357 ORTHO05D005064 9.2e-10 67.8 110 45.5
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 9.2e-10 67.8 131 38.9
AUR62015824 Chenopodium quinoa HOM05D004357 ORTHO05D005064 9.2e-10 67.8 127 34.6
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 9.2e-10 67.8 127 34.6
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 9.2e-10 67.8 129 37.2
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 9.2e-10 67.8 130 42.3
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 1.2e-09 67.4 127 35.4
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 1.2e-09 67.4 75 48.0
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 1.2e-09 67.4 136 37.5
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 1.6e-09 67.0 76 53.9
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 1.6e-09 67.0 133 36.8
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 2.1e-09 66.6 73 50.7
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 2.1e-09 66.6 73 50.7
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.1e-09 66.6 73 52.1
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 2.1e-09 66.6 126 39.7
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 2.7e-09 66.2 127 37.8
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 3.5e-09 65.9 134 36.6
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.5e-09 65.9 126 36.5
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 3.5e-09 65.9 76 50.0
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 6.0e-09 65.1 77 55.8
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 6.0e-09 65.1 77 55.8
RhsimUnG0248700 Rhododendron simsii HOM05D004357 ORTHO05D005064 6.0e-09 65.1 137 37.2
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 7.8e-09 64.7 76 52.6
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 7.8e-09 64.7 131 39.7
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 1.0e-08 64.3 129 32.6
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 1.0e-08 64.3 128 35.9
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 1.0e-08 64.3 76 51.3
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 1.0e-08 64.3 76 51.3
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.0e-08 64.3 76 48.7
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 1.3e-08 63.9 76 51.3
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.7e-08 63.5 74 54.1
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 1.7e-08 63.5 134 38.8
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 2.3e-08 63.2 132 37.9
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 2.3e-08 63.2 134 38.8
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 2.3e-08 63.2 76 51.3
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 2.3e-08 63.2 144 36.1
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 3.0e-08 62.8 129 34.1
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 3.9e-08 62.4 69 53.6
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 3.9e-08 62.4 69 53.6
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 3.9e-08 62.4 76 51.3
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 5.1e-08 62.0 70 47.1
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 5.1e-08 62.0 131 35.9
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 5.1e-08 62.0 70 47.1
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 6.6e-08 61.6 131 36.6
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 6.6e-08 61.6 133 40.6
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 6.6e-08 61.6 133 40.6
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 6.6e-08 61.6 126 35.7
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 6.6e-08 61.6 71 43.7
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 8.6e-08 61.2 70 47.1
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 8.6e-08 61.2 132 37.1
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 1.9e-07 60.1 129 34.1
Duzib235G1176 Durio zibethinus HOM05D002014 ORTHO05D001958 2.5e-07 59.7 134 37.3
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 4.3e-07 58.9 136 35.3
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 5.6e-07 58.5 48 54.2
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 7.3e-07 58.2 132 36.4
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 9.5e-07 57.8 135 34.1
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 9.5e-07 57.8 135 32.6
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 1.2e-06 57.4 74 40.5
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 1.6e-06 57.0 119 37.8
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 4.7e-06 55.5 131 35.9


User provided reference genes

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