Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 0.0e+00 1169.5 593 100.0
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.3e-260 902.9 600 78.3
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.2e-232 810.1 600 72.7
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 3.8e-228 795.0 610 70.8
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 1.9e-227 792.7 599 71.6
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 2.3e-225 785.8 590 71.0
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 4.0e-225 785.0 587 71.2
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 2.0e-224 782.7 594 69.9
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 5.9e-221 771.2 587 69.7
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 3.4e-216 755.4 587 68.5
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 3.5e-213 745.3 631 64.8
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.1e-211 740.3 600 67.5
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-207 726.1 607 63.4
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 9.5e-203 710.7 642 60.4
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 3.7e-199 698.7 601 64.6
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.2e-198 695.7 603 63.8
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.5e-184 650.2 614 59.0
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 2.9e-183 646.0 611 59.6
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 2.1e-178 629.8 612 58.5
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 4.5e-176 622.1 615 57.4
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.1e-169 599.4 613 55.3
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 3.8e-167 592.4 615 55.9
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 6.4e-167 591.7 611 55.5
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 9.3e-166 587.8 616 55.0
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 4.6e-165 585.5 613 54.2
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 7.4e-163 578.2 612 53.4
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 7.4e-163 578.2 674 51.6
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 7.4e-163 578.2 615 55.0
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 1.6e-162 577.0 613 54.2
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.1e-161 572.8 620 54.7
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 2.6e-160 569.7 611 54.2
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.2e-159 566.6 615 54.3
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.5e-157 559.3 615 54.0
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 3.0e-156 556.2 615 53.5
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 4.8e-154 548.9 613 52.7
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 7.6e-152 541.6 644 50.9
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 2.2e-151 540.0 615 51.9
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 3.8e-151 539.3 616 51.5
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 5.5e-150 535.4 616 51.6
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.7e-149 533.1 614 51.8
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 3.6e-149 532.7 610 50.7
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 4.6e-149 532.3 616 51.8
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 7.9e-149 531.6 616 51.6
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.8e-148 530.4 614 52.0
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.0e-148 529.6 614 51.8
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.9e-147 526.9 606 50.3
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 5.7e-147 525.4 630 49.5
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 9.7e-147 524.6 603 51.7
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.3e-146 524.2 638 48.4
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.7e-146 522.7 620 49.0
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 4.8e-146 522.3 624 49.7
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 1.1e-145 521.2 615 51.7
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.1e-145 519.6 611 50.9
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.5e-142 510.0 611 49.8
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 2.1e-141 506.9 620 48.9
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 3.6e-141 506.1 619 50.6
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.0e-140 504.6 619 49.6
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 8.8e-140 501.5 615 49.9
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.1e-139 501.1 600 52.5
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 3.3e-139 499.6 617 49.3
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 5.7e-139 498.8 642 48.0
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 3.7e-138 496.1 615 49.3
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.1e-137 494.6 615 49.6
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.1e-137 493.0 642 47.5
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 1.7e-135 487.3 622 47.3
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 5.5e-134 482.3 622 45.5
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 7.2e-134 481.9 612 48.0
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 2.7e-133 479.9 623 46.2
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 3.6e-133 479.6 612 47.7
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 2.3e-132 476.9 616 47.1
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 5.2e-132 475.7 615 47.5
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 6.7e-132 475.3 615 47.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 1.1e-131 474.6 619 48.3
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 9.7e-131 471.5 621 44.8
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 8.2e-130 468.4 595 47.9
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.4e-129 467.6 617 46.0
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 2.2e-127 460.3 599 48.4
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.9e-127 459.9 611 47.5
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 8.5e-127 458.4 623 46.2
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 3.6e-125 453.0 618 44.7
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.0e-124 451.4 615 46.7
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.4e-124 451.1 614 45.1
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 3.0e-124 449.9 543 50.5
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.0e-124 449.9 620 45.2
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 8.8e-124 448.4 484 52.5
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.2e-123 448.0 603 47.1
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 2.6e-123 446.8 622 44.1
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 3.3e-123 446.4 622 43.9
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 5.7e-123 445.7 661 43.3
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.2e-122 443.7 614 45.8
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 6.3e-122 442.2 616 45.5
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 1.4e-121 441.0 618 44.7
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 3.1e-121 439.9 618 44.8
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 4.1e-121 439.5 481 53.0
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 5.3e-121 439.1 610 45.7
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 7.7e-120 435.3 612 45.9
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 2.5e-118 430.3 624 43.9
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 5.5e-118 429.1 640 43.0
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.1e-117 427.2 614 43.0
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 4.7e-117 426.0 613 44.7
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 4.7e-117 426.0 612 42.6
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 1.8e-116 424.1 617 43.8
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 3.0e-116 423.3 610 43.0
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 3.0e-116 423.3 618 44.3
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 4.0e-116 422.9 614 44.5
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 6.8e-116 422.2 395 56.7
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 9.8e-115 418.3 643 42.3
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 6.3e-114 415.6 604 43.5
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 1.8e-113 414.1 612 43.6
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 2.4e-113 413.7 609 42.4
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 5.4e-113 412.5 621 44.0
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 9.1e-113 411.8 612 43.8
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 3.8e-111 406.4 551 45.6
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.5e-110 403.7 606 42.7
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 7.2e-110 402.1 609 42.2
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.2e-109 401.4 612 43.0
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.6e-109 401.0 616 41.7
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 8.0e-109 398.7 615 41.1
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 2.3e-108 397.1 615 41.0
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 5.2e-108 396.0 612 42.6
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 8.3e-106 388.7 636 40.9
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 2.3e-103 380.6 609 39.9
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.3e-102 375.6 323 62.5
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 9.5e-102 375.2 552 43.8
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 8.9e-100 368.6 622 41.0
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 4.4e-99 366.3 612 39.7
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 5.4e-97 359.4 611 40.3
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 5.6e-94 349.4 409 51.6
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.0e-87 328.6 377 51.5
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.4e-84 318.2 254 63.0
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 8.3e-82 308.9 333 52.3
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.1e-80 304.3 456 43.4
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.7e-79 301.2 246 67.1
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 6.4e-74 282.7 375 47.5
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 6.0e-72 276.2 355 47.3
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-66 257.7 271 54.2
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.2e-66 257.7 359 44.8
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.6e-64 251.5 432 36.8
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 6.6e-63 246.1 247 55.9
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.1e-62 245.4 218 58.3
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 5.6e-62 243.0 251 55.4
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.3e-61 241.9 383 43.1
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.1e-57 228.8 442 34.2
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 1.1e-57 228.8 558 34.4
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 1.3e-55 221.9 611 30.6
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 5.1e-55 219.9 238 48.7
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.5e-54 217.6 248 47.2
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 4.3e-54 216.9 638 30.1
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 1.4e-52 211.8 376 34.0
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-47 195.7 291 43.3
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 6.9e-44 183.0 319 39.8
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.2e-42 177.9 230 50.0
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 2.7e-40 171.0 177 55.4
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.8e-39 168.3 183 50.8
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 4.3e-38 163.7 233 47.6
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.8e-37 161.0 234 44.4
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 7.9e-32 142.9 169 53.3
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 8.8e-31 139.4 366 32.8
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.2e-29 134.8 95 69.5
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 4.5e-27 127.1 123 52.8
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 2.9e-26 124.4 255 37.6
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.9e-24 116.3 222 36.5
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 4.4e-22 110.5 174 43.1
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 3.2e-17 94.4 199 35.7
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 1.2e-16 92.4 91 54.9
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 8.0e-16 89.7 240 32.5
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 8.8e-15 86.3 179 36.3
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 4.4e-14 84.0 121 38.8
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 8.2e-13 79.7 73 52.1
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.0e-10 72.8 98 45.9
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 2.9e-10 71.2 345 24.6
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.1e-08 63.5 66 53.0
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.0e-07 61.2 45 62.2


User provided reference genes

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