Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 3.8e-57 224.6 110 100.0
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.5e-40 168.7 112 77.7
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 4.3e-40 167.9 111 78.4
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 5.6e-40 167.5 114 73.7
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 5.6e-40 167.5 109 75.2
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 7.3e-40 167.2 110 75.5
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.1e-38 163.3 110 75.5
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.8e-38 162.5 114 73.7
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.8e-38 162.5 107 79.4
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.3e-38 162.2 110 74.5
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.3e-38 162.2 112 75.0
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 3.1e-38 161.8 110 74.5
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 4.0e-38 161.4 110 73.6
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 4.0e-38 161.4 110 76.4
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 4.0e-38 161.4 110 74.5
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 4.0e-38 161.4 94 86.2
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 5.2e-38 161.0 86 90.7
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 6.8e-38 160.6 112 75.0
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 8.9e-38 160.2 111 76.6
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.2e-37 159.8 109 73.4
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.2e-37 159.8 114 72.8
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.2e-37 159.8 117 74.4
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 2.0e-37 159.1 94 79.8
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.0e-37 159.1 113 68.1
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.6e-37 158.7 101 77.2
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.6e-37 158.7 114 70.2
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.6e-37 158.7 110 74.5
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.4e-37 158.3 113 73.5
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.4e-37 158.3 112 74.1
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.4e-37 158.3 113 73.5
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.4e-37 157.9 114 68.4
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 5.8e-37 157.5 117 71.8
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 5.8e-37 157.5 114 71.1
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 7.5e-37 157.1 111 73.0
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 7.5e-37 157.1 119 68.9
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 9.8e-37 156.8 89 86.5
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 9.8e-37 156.8 113 73.5
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 9.8e-37 156.8 88 88.6
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.3e-36 156.4 89 85.4
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.7e-36 156.0 112 73.2
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.7e-36 156.0 110 73.6
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.2e-36 155.6 108 73.1
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.2e-36 155.6 108 73.1
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.2e-36 155.6 108 73.1
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.2e-36 155.6 111 70.3
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.2e-36 155.6 113 69.9
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.2e-36 155.6 113 69.9
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.2e-36 155.6 113 69.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.9e-36 155.2 113 69.0
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 6.4e-36 154.1 113 69.0
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 8.3e-36 153.7 112 75.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 8.3e-36 153.7 111 69.4
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 8.3e-36 153.7 113 70.8
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.4e-35 152.9 115 68.7
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.1e-35 151.4 102 76.5
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 4.1e-35 151.4 110 69.1
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 7.0e-35 150.6 115 67.0
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 7.0e-35 150.6 118 68.6
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 9.2e-35 150.2 115 67.8
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 9.2e-35 150.2 87 81.6
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.6e-34 149.4 121 66.9
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.1e-34 149.1 102 74.5
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.1e-34 149.1 103 72.8
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 3.5e-34 148.3 115 67.8
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.5e-34 148.3 115 67.8
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 4.6e-34 147.9 115 67.8
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 7.8e-34 147.1 114 67.5
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 7.8e-34 147.1 115 68.7
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 7.8e-34 147.1 144 56.2
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.0e-33 146.7 83 83.1
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.7e-33 146.0 115 69.6
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.3e-33 145.6 92 77.2
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 2.3e-33 145.6 115 67.8
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.3e-33 145.6 115 67.8
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.0e-33 145.2 91 76.9
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.9e-33 144.8 115 67.0
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 3.9e-33 144.8 108 72.2
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.9e-33 144.8 115 67.0
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 5.0e-33 144.4 92 76.1
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 6.6e-33 144.1 115 65.2
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.6e-33 144.1 97 74.2
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.1e-32 143.3 99 74.7
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.1e-32 143.3 110 67.3
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.1e-32 143.3 88 78.4
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.1e-32 143.3 110 67.3
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.5e-32 142.9 115 66.1
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.5e-32 142.9 115 65.2
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-32 142.5 110 67.3
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-32 142.5 110 67.3
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.3e-32 141.7 90 78.9
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.3e-32 141.4 141 56.7
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.6e-32 141.0 85 78.8
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.6e-32 141.0 110 66.4
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.6e-32 141.0 114 64.0
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 7.3e-32 140.6 95 72.6
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 7.3e-32 140.6 120 61.7
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 7.3e-32 140.6 88 79.5
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 7.3e-32 140.6 88 77.3
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 7.3e-32 140.6 108 67.6
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 9.5e-32 140.2 97 70.1
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 9.5e-32 140.2 114 65.8
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.1e-31 139.0 113 65.5
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 2.1e-31 139.0 105 70.5
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 2.1e-31 139.0 135 55.6
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.8e-31 138.7 100 69.0
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 6.2e-31 137.5 114 63.2
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.1e-30 136.7 114 61.4
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.4e-30 136.3 115 64.3
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 1.4e-30 136.3 85 76.5
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.4e-30 136.3 147 53.1
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.4e-30 136.3 85 75.3
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.4e-30 136.3 84 73.8
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 3.1e-30 135.2 87 75.9
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 4.0e-30 134.8 87 74.7
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 4.4e-29 131.3 114 61.4
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 7.5e-29 130.6 103 63.1
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 7.5e-29 130.6 82 74.4
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 9.9e-29 130.2 111 59.5
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.3e-28 129.8 111 61.3
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.1e-27 126.7 114 59.6
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.1e-27 126.7 94 66.0
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 3.2e-27 125.2 118 58.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 3.2e-27 125.2 116 58.6
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 9.2e-27 123.6 111 59.5
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 4.6e-26 121.3 96 70.8
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.7e-25 119.4 81 70.4
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 3.9e-25 118.2 72 76.4
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 3.3e-24 115.2 80 68.8
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 4.3e-24 114.8 80 68.8
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 7.3e-24 114.0 96 61.5
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.2e-23 113.2 79 68.4
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.6e-23 111.7 86 73.3
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 8.1e-23 110.5 86 67.4
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.8e-22 109.4 86 66.3
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.2e-21 106.7 89 70.8
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.6e-21 105.5 83 68.7
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.6e-21 105.5 83 68.7
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.9e-20 102.1 61 83.6
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 3.8e-20 101.7 83 63.9
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 6.4e-20 100.9 67 73.1
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 7.1e-19 97.4 93 58.1
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.6e-18 94.7 76 68.4
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 5.1e-17 91.3 74 62.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 6.6e-17 90.9 77 58.4
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 6.6e-17 90.9 77 58.4
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.9e-16 89.4 96 52.1
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 4.3e-16 88.2 81 53.1
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 9.6e-16 87.0 51 80.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.1e-15 85.9 61 70.5
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.8e-15 85.5 83 49.4
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 4.7e-15 84.7 50 82.0
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 4.0e-14 81.6 69 60.9
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 3.4e-13 78.6 90 45.6
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 8.4e-12 73.9 55 61.8
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 8.4e-12 73.9 55 63.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.4e-11 71.2 54 63.0
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 6.0e-10 67.8 78 51.3
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.0e-10 67.8 50 72.0
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 5.1e-09 64.7 72 48.6
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 2.5e-08 62.4 65 46.2
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 2.5e-08 62.4 93 35.5
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.6e-07 59.7 51 60.8
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.0e-06 55.1 39 71.8


User provided reference genes

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