Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 0.0e+00 1316.6 670 100.0
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 0.0e+00 1108.2 670 83.3
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 0.0e+00 1105.9 672 83.0
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 0.0e+00 1101.3 674 82.9
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 0.0e+00 1091.3 670 81.8
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 0.0e+00 1090.9 670 81.8
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 0.0e+00 1090.1 643 84.6
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 0.0e+00 1082.4 671 81.8
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 3.8e-309 1064.3 662 80.7
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 4.4e-305 1050.8 676 78.0
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 6.3e-304 1047.0 675 78.1
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 8.6e-277 956.8 582 83.5
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 1.0e-269 933.3 671 69.3
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 1.1e-268 929.9 670 69.1
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 1.9e-268 929.1 666 69.7
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 1.2e-267 926.4 643 70.1
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 2.6e-265 918.7 649 68.9
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 7.6e-265 917.1 663 70.0
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 2.9e-264 915.2 645 69.9
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.1e-263 913.3 649 69.2
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 4.2e-263 911.4 671 68.0
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 3.9e-261 904.8 649 68.7
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 5.1e-261 904.4 648 69.1
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 8.7e-261 903.7 664 67.8
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 1.9e-260 902.5 668 68.0
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 7.3e-260 900.6 660 67.9
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.3e-259 899.8 669 66.5
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 2.1e-259 899.0 701 64.1
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 2.1e-259 899.0 671 67.1
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 4.8e-259 897.9 667 66.7
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 3.1e-258 895.2 665 67.4
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 3.8e-256 888.3 670 66.6
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.8e-256 888.3 670 66.4
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 2.4e-255 885.6 670 66.7
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 2.4e-255 885.6 663 65.9
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 4.2e-255 884.8 655 66.9
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 9.3e-255 883.6 670 65.4
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 1.2e-254 883.2 662 66.8
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 7.8e-254 880.6 671 66.3
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 4.3e-252 874.8 667 65.1
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 5.6e-252 874.4 653 67.4
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 6.2e-251 870.9 670 66.4
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 1.1e-250 870.2 692 63.9
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 3.1e-250 868.6 671 65.6
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 4.0e-250 868.2 665 64.7
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 1.5e-249 866.3 665 64.7
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 1.4e-247 859.8 645 64.8
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 1.4e-247 859.8 684 61.4
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 3.0e-245 852.0 671 63.5
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 3.9e-245 851.7 651 63.3
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 2.5e-244 849.0 649 64.1
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 4.3e-244 848.2 674 63.6
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 1.6e-243 846.3 664 64.2
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 3.7e-243 845.1 651 63.3
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 6.2e-243 844.3 723 60.2
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 1.1e-242 843.6 671 62.0
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.1e-242 843.6 733 60.7
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 1.8e-242 842.8 683 62.8
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 9.0e-242 840.5 677 61.3
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 9.0e-242 840.5 631 67.0
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.2e-241 840.1 655 62.7
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 5.8e-241 837.8 663 62.3
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.1e-239 833.6 663 62.0
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 2.1e-238 829.3 656 61.7
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 2.1e-238 829.3 655 62.3
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 1.3e-237 826.6 690 60.0
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 2.3e-237 825.9 651 61.6
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 1.5e-236 823.2 670 61.6
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 5.7e-236 821.2 671 62.4
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 2.1e-235 819.3 634 62.1
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 4.8e-235 818.1 580 69.7
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 2.4e-234 815.8 665 61.8
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 4.0e-234 815.1 706 58.1
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 1.9e-231 806.2 672 61.6
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.9e-231 806.2 672 61.9
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 3.2e-231 805.4 634 63.6
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 4.6e-230 801.6 695 60.3
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 1.1e-228 797.0 725 56.1
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 2.5e-228 795.8 572 68.0
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.5e-228 795.8 576 67.7
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 5.3e-226 788.1 670 58.5
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 8.5e-224 780.8 651 61.9
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 5.5e-223 778.1 655 59.2
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 2.5e-220 769.2 666 59.0
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 3.3e-220 768.8 672 57.9
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 5.7e-220 768.1 556 67.8
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.4e-218 763.5 651 58.8
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 4.1e-218 761.9 638 60.7
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 2.0e-217 759.6 664 57.5
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 2.6e-217 759.2 704 57.7
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 6.1e-214 748.0 630 60.0
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 3.1e-210 735.7 691 55.4
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.8e-203 711.8 670 56.7
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 7.7e-201 704.5 664 54.7
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 2.2e-200 703.0 514 67.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.1e-191 674.1 624 57.7
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.1e-191 674.1 674 54.0
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 4.1e-186 655.6 494 65.4
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.3e-181 639.8 594 55.4
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 6.8e-165 585.1 650 46.9
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 9.2e-162 574.7 665 46.0
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 4.9e-139 499.2 679 42.7
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.2e-137 494.6 352 67.9
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 4.0e-125 453.0 581 45.3
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 4.6e-121 439.5 309 70.9
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 3.8e-91 340.1 355 51.8
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 4.0e-88 330.1 647 36.5
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 5.2e-88 329.7 308 52.3
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 1.1e-77 295.4 654 32.9
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.8e-77 294.7 237 62.9
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.8e-72 278.1 342 47.1
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.8e-49 201.1 165 55.8
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 3.7e-46 190.7 304 37.8
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 3.2e-45 187.6 622 28.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.3e-43 181.4 318 36.2
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 1.3e-35 155.6 120 65.8
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 1.1e-26 125.9 173 43.4
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 2.4e-24 118.2 114 54.4
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 6.9e-24 116.7 115 55.7
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 2.2e-22 111.7 100 61.0
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 4.0e-16 90.9 101 45.5
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 9.9e-15 86.3 78 52.6
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 2.9e-14 84.7 73 50.7
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.9e-14 84.0 65 60.0
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.6e-12 79.0 56 57.1
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 2.7e-12 78.2 44 77.3
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.7e-12 78.2 44 77.3
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 7.9e-12 76.6 44 75.0
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.0e-11 74.7 42 78.6
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.9e-11 74.3 42 76.2
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 5.1e-11 73.9 44 75.0
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 1.9e-10 72.0 62 50.0
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 1.9e-10 72.0 62 50.0
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 5.6e-10 70.5 42 76.2
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 1.1e-08 66.2 38 78.9


User provided reference genes

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