Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 3.0e-257 891.3 450 100.0
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 1.3e-188 663.3 438 76.3
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 1.7e-188 662.9 452 74.6
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 1.8e-185 652.9 431 75.6
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 4.6e-181 638.3 438 73.5
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 1.0e-180 637.1 451 74.1
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 1.9e-179 632.9 445 72.6
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 3.4e-176 622.1 455 71.4
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 4.3e-171 605.1 445 70.6
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 4.4e-152 542.0 449 64.8
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 2.4e-150 536.2 444 62.2
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 1.2e-149 533.9 444 62.6
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 1.2e-149 533.9 437 62.5
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 1.4e-145 520.4 437 60.9
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 1.3e-143 513.8 437 61.1
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 2.9e-143 512.7 433 60.7
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 2.9e-143 512.7 449 59.5
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 2.9e-143 512.7 432 60.2
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 1.1e-142 510.8 445 59.6
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 2.1e-141 506.5 431 60.3
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 7.9e-141 504.6 432 61.3
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 2.1e-138 496.5 431 58.0
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 3.7e-138 495.7 419 59.9
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 4.0e-137 492.3 422 59.2
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 5.3e-137 491.9 419 59.7
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 9.0e-137 491.1 418 59.3
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 2.6e-136 489.6 419 59.2
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 3.4e-136 489.2 421 58.9
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 9.9e-136 487.6 465 56.8
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.3e-135 487.3 432 58.8
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 2.9e-135 486.1 419 60.1
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 4.9e-135 485.3 419 59.4
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 6.4e-135 485.0 441 58.0
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.1e-134 484.2 441 57.8
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.6e-133 480.3 427 57.8
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 4.6e-133 478.8 444 55.9
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 3.0e-132 476.1 470 54.0
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 5.1e-132 475.3 424 56.8
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 6.7e-132 474.9 428 56.3
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.1e-131 474.2 436 57.3
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.1e-131 474.2 436 57.1
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 1.9e-131 473.4 444 55.0
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 4.8e-130 468.8 429 57.8
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 8.2e-130 468.0 433 56.8
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 1.4e-129 467.2 448 55.4
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 1.2e-128 464.2 437 55.8
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 1.5e-128 463.8 429 57.6
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 2.6e-128 463.0 428 55.8
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 3.4e-128 462.6 424 56.1
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 3.4e-128 462.6 420 56.0
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 3.4e-128 462.6 417 56.4
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 4.5e-128 462.2 437 55.4
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 4.9e-127 458.8 435 56.6
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 6.0e-125 451.8 433 55.2
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 1.0e-124 451.1 438 53.2
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 1.3e-124 450.7 454 53.7
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 3.0e-124 449.5 420 55.0
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 3.9e-124 449.1 420 55.0
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 3.9e-124 449.1 421 53.9
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 5.1e-124 448.7 442 56.3
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 5.7e-123 445.3 433 55.2
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 1.6e-122 443.7 303 71.6
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 4.8e-122 442.2 424 55.4
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 1.4e-121 440.7 425 53.4
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 4.5e-120 435.6 420 53.6
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 4.5e-120 435.6 499 48.3
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 7.7e-120 434.9 422 54.7
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 7.7e-120 434.9 438 56.4
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 3.8e-119 432.6 422 54.7
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 1.9e-118 430.3 425 52.2
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 1.6e-117 427.2 420 53.3
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 3.0e-116 422.9 425 52.7
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 5.1e-116 422.2 434 51.6
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 1.5e-115 420.6 447 51.9
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 7.4e-115 418.3 420 52.4
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 2.8e-114 416.4 428 53.5
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 8.2e-114 414.8 422 51.4
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 8.2e-114 414.8 422 51.7
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 2.4e-113 413.3 423 51.1
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 4.1e-113 412.5 417 53.0
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 6.9e-113 411.8 482 49.6
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 5.9e-112 408.7 424 51.9
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 7.7e-112 408.3 426 51.4
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.3e-111 407.5 440 52.3
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 8.5e-111 404.8 425 51.8
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 1.1e-110 404.4 374 56.4
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 3.2e-110 402.9 432 49.5
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 4.4e-107 392.5 415 50.4
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 1.4e-105 387.5 296 62.5
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 4.1e-105 386.0 358 53.4
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 5.0e-103 379.0 436 47.9
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 6.5e-103 378.6 423 51.1
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 4.2e-102 375.9 429 46.2
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 3.6e-101 372.9 418 47.6
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 1.0e-100 371.3 430 46.0
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 5.7e-99 365.5 452 47.1
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 5.9e-96 355.5 437 47.4
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 5.3e-89 332.4 320 55.9
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 6.8e-84 315.5 341 49.6
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 4.5e-80 302.8 424 40.3
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 5.7e-75 285.8 446 41.7
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 3.6e-53 213.4 171 62.0
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 3.6e-53 213.4 272 45.2
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 4.7e-53 213.0 383 38.9
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 8.1e-53 212.2 257 47.1
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 1.8e-52 211.1 368 36.1
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 4.6e-48 196.4 146 64.4
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 7.8e-48 195.7 345 34.8
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.3e-47 194.9 150 63.3
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 1.6e-45 188.0 225 45.3
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 4.7e-45 186.4 284 35.6
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 1.1e-44 185.3 218 50.5
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 3.4e-43 180.3 366 31.4
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 1.6e-40 171.4 141 56.0
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 3.9e-39 166.8 146 58.9
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 5.6e-30 136.3 160 46.2
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 7.3e-30 136.0 166 45.2
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.4e-28 131.7 274 29.6
Cre01.g048600 Chlamydomonas reinhardtii HOM05D006228 ORTHO05D007847 9.0e-20 102.4 201 29.9
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 3.2e-17 94.0 253 24.9
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 3.0e-15 87.4 61 63.9
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 3.0e-15 87.4 61 65.6
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 2.9e-10 70.9 113 39.8
PRCOL_00002967 Prasinoderma coloniale HOM05D006228 ORTHO05D007847 1.4e-09 68.6 170 27.6


User provided reference genes

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