Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 0.0e+00 1252.3 630 100.0
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 7.1e-281 970.3 630 79.4
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.6e-277 959.1 624 78.7
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.8e-277 958.4 635 77.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 2.9e-274 948.3 639 77.5
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 9.3e-273 943.3 637 76.8
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 2.3e-271 938.7 624 76.3
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 3.6e-269 931.4 633 76.5
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.7e-266 922.5 624 75.6
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 9.0e-260 900.2 620 72.6
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.3e-253 879.8 625 71.2
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.1e-253 879.0 627 71.9
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.1e-228 797.0 559 72.1
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 3.7e-213 745.3 640 61.2
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 2.9e-210 735.7 631 61.6
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 5.0e-210 734.9 630 61.1
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.1e-208 729.6 637 61.1
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 8.0e-208 727.6 637 61.7
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 8.0e-208 727.6 631 60.9
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 2.3e-207 726.1 630 60.8
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 4.9e-205 718.4 645 59.7
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 4.1e-204 715.3 641 59.1
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 7.0e-204 714.5 638 61.0
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 2.7e-203 712.6 641 59.1
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 4.5e-203 711.8 635 60.6
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 3.3e-201 705.7 621 59.7
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 6.1e-200 701.4 639 58.2
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.4e-199 700.3 640 59.1
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.8e-199 699.9 628 60.0
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 3.0e-199 699.1 638 58.3
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.2e-198 697.2 648 58.8
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 9.8e-198 694.1 614 59.4
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.3e-197 693.7 673 56.3
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.7e-197 692.2 653 58.2
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.1e-196 690.6 637 59.0
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 2.7e-195 686.0 575 63.8
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 5.0e-194 681.8 637 57.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 8.6e-194 681.0 634 56.8
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.2e-192 677.2 635 58.6
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 3.6e-192 675.6 641 55.7
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 4.7e-192 675.2 630 59.2
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 5.8e-190 668.3 635 56.4
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.3e-189 667.2 630 56.3
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.2e-189 666.4 687 54.9
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.6e-187 660.2 654 56.3
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.7e-186 656.8 629 56.1
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 6.6e-186 654.8 637 53.7
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 8.6e-186 654.4 652 54.9
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.1e-185 654.1 634 56.3
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 2.1e-184 649.8 642 55.3
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 2.1e-184 649.8 640 54.5
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 2.6e-182 642.9 624 55.6
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.4e-182 642.1 598 58.9
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 9.8e-182 641.0 636 54.1
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 6.4e-181 638.3 631 54.2
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.4e-180 637.1 641 54.4
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 4.1e-180 635.6 634 54.3
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.2e-179 634.0 624 54.8
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.6e-179 633.6 623 54.1
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.3e-178 630.6 643 53.7
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.7e-178 630.2 647 52.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 7.3e-177 624.8 638 55.2
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 9.5e-177 624.4 623 53.8
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 8.1e-176 621.3 623 52.8
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.1e-175 620.9 643 53.0
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.1e-175 620.9 590 57.5
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.2e-174 617.5 638 52.7
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 2.0e-174 616.7 641 51.2
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 9.9e-174 614.4 623 53.6
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.1e-171 606.7 652 52.6
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 2.7e-171 606.3 500 64.6
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 4.3e-169 599.0 576 56.8
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 7.3e-169 598.2 621 51.7
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 7.3e-169 598.2 631 50.4
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.6e-168 597.0 629 51.0
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 6.8e-167 591.7 615 50.4
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.5e-166 590.5 636 50.2
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 4.4e-166 589.0 600 54.3
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 7.6e-166 588.2 637 49.9
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.7e-165 587.0 649 49.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 4.9e-165 585.5 609 55.3
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.9e-165 585.5 637 51.8
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.1e-164 584.3 653 52.1
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.1e-164 584.3 708 49.3
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 3.2e-164 582.8 636 52.2
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 5.4e-164 582.0 638 50.5
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 7.1e-164 581.6 657 49.2
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 7.1e-164 581.6 634 50.0
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 6.0e-163 578.6 588 54.1
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 6.0e-163 578.6 641 50.2
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 7.8e-163 578.2 654 50.5
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.9e-162 575.9 633 49.4
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 5.1e-162 575.5 628 49.7
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 6.6e-162 575.1 532 57.7
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 6.6e-162 575.1 648 48.6
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 4.3e-161 572.4 635 48.7
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 9.6e-161 571.2 641 49.8
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.1e-159 567.8 627 48.5
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.1e-159 567.8 627 48.5
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.8e-159 567.0 646 50.5
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.4e-159 566.6 628 48.4
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.4e-159 566.6 628 48.4
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 3.1e-159 566.2 627 48.3
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 5.3e-159 565.5 676 47.5
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.2e-158 564.3 632 48.1
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.2e-158 564.3 657 48.7
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 2.6e-158 563.1 583 53.2
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 4.9e-157 558.9 585 53.5
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 3.2e-156 556.2 489 58.1
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.0e-154 551.2 639 48.5
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.9e-153 547.0 515 57.1
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.5e-153 546.6 604 47.7
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.6e-153 545.4 565 54.2
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 1.1e-151 541.2 566 52.8
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 9.0e-151 538.1 669 47.8
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 9.0e-151 538.1 529 52.7
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 5.8e-150 535.4 490 57.3
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 9.3e-148 528.1 501 56.9
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.3e-146 524.2 629 47.4
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 6.7e-146 521.9 584 48.6
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.3e-144 517.7 622 49.5
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 4.9e-141 505.8 522 52.3
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 7.1e-140 501.9 526 53.4
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 3.5e-139 499.6 526 52.5
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.4e-122 444.5 421 56.5
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 9.7e-121 438.3 481 48.2
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.4e-119 433.7 491 49.7
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.4e-119 433.7 491 49.7
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 7.7e-118 428.7 631 43.9
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 9.4e-116 421.8 617 43.3
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 7.9e-115 418.7 554 46.0
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 5.1e-114 416.0 641 40.6
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.7e-112 411.0 477 47.8
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 1.6e-110 404.4 622 41.2
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 7.7e-110 402.1 609 41.5
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 4.1e-103 379.8 395 50.1
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 2.1e-99 367.5 491 47.0
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.2e-92 343.2 352 54.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.3e-74 284.3 676 33.9
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.5e-68 264.2 504 35.3
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 9.9e-57 225.7 274 49.3
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.7e-48 198.4 158 58.2
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.7e-48 198.4 136 68.4
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.0e-45 189.1 195 46.2
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.4e-23 115.5 345 25.8
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.6e-22 112.1 62 79.0
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.7e-20 103.6 157 42.0
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 9.7e-12 76.3 126 40.5
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.3e-08 65.9 64 46.9
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-08 64.7 39 69.2


User provided reference genes

Program Settings