Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 3.2e-189 664.8 317 100.0
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 1.7e-158 562.8 319 83.7
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 2.5e-157 558.9 317 81.7
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 6.1e-156 554.3 319 81.5
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 4.5e-151 538.1 318 79.9
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.6e-148 529.6 317 79.2
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 1.1e-144 516.9 318 78.0
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 3.4e-138 495.4 318 75.5
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 5.7e-138 494.6 289 79.2
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 9.8e-138 493.8 318 75.5
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 2.2e-129 466.1 314 70.7
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 4.6e-127 458.4 321 67.6
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 8.6e-126 454.1 317 70.0
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 1.5e-125 453.4 319 66.1
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 4.7e-124 448.4 318 66.7
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 1.5e-122 443.4 317 65.6
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.6e-122 442.6 319 65.8
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 7.5e-122 441.0 317 65.3
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 7.5e-122 441.0 317 65.0
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 8.3e-121 437.6 317 65.3
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 4.1e-120 435.3 317 65.9
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 5.4e-120 434.9 318 62.6
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 7.0e-120 434.5 318 66.4
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 6.0e-119 431.4 354 60.5
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.7e-118 429.9 318 63.2
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 1.1e-117 427.2 321 64.5
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.5e-117 426.8 324 63.6
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 4.3e-117 425.2 319 63.0
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 5.6e-117 424.9 319 65.2
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 5.6e-117 424.9 319 64.6
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 2.1e-116 422.9 323 63.2
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 3.6e-116 422.2 335 61.5
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 4.7e-116 421.8 317 65.3
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 6.2e-116 421.4 320 65.0
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.8e-115 419.9 319 63.9
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 1.8e-115 419.9 318 62.6
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 1.8e-115 419.9 317 62.8
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 3.1e-115 419.1 321 62.0
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 6.8e-115 417.9 319 61.4
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 6.8e-115 417.9 322 62.4
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 1.2e-114 417.2 320 63.8
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.6e-114 416.0 318 61.9
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 9.8e-114 414.1 317 62.1
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 9.8e-114 414.1 316 61.1
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 1.7e-113 413.3 319 61.4
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 2.2e-113 412.9 317 65.9
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 2.9e-113 412.5 325 61.5
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 4.9e-113 411.8 317 62.1
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 4.9e-113 411.8 317 62.1
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.4e-112 410.2 320 61.2
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 1.4e-112 410.2 317 61.8
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 7.1e-112 407.9 317 61.2
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 9.2e-112 407.5 317 62.1
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.6e-111 406.8 316 62.0
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 1.6e-111 406.8 321 61.1
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 2.1e-111 406.4 317 60.9
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 3.5e-111 405.6 318 60.7
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 3.5e-111 405.6 320 62.2
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 6.0e-111 404.8 317 61.2
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 6.0e-111 404.8 317 60.9
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 3.0e-110 402.5 323 61.9
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 6.6e-110 401.4 317 63.4
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.1e-109 400.6 321 61.4
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.1e-109 400.6 317 59.9
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 1.5e-109 400.2 323 61.0
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 2.1e-108 396.4 318 60.4
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 8.1e-108 394.4 319 59.6
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 1.1e-107 394.0 319 58.0
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.4e-107 393.7 316 59.8
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 4.0e-107 392.1 329 58.1
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 1.2e-106 390.6 318 59.1
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.5e-106 390.2 275 69.1
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 2.6e-106 389.4 318 59.4
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 4.4e-106 388.7 324 58.0
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.7e-102 376.7 324 58.3
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 2.3e-102 376.3 325 57.5
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 6.6e-102 374.8 371 53.4
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 1.5e-101 373.6 330 55.8
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.8e-100 369.4 323 57.3
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 8.1e-100 367.9 256 67.2
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 1.8e-99 366.7 319 56.7
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.9e-96 356.7 315 55.2
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 4.2e-96 355.5 241 70.5
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.9e-94 349.0 319 56.4
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 6.6e-94 348.2 330 53.9
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.1e-93 347.4 319 55.5
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.5e-93 347.1 240 67.5
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.5e-93 346.3 244 66.0
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 5.6e-93 345.1 240 68.8
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 7.1e-88 328.2 335 51.6
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 6.0e-87 325.1 320 53.4
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 3.0e-86 322.8 326 50.9
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 2.5e-85 319.7 332 51.5
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.0e-82 310.1 319 51.1
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.2e-79 300.8 322 48.4
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 2.3e-78 296.6 225 62.7
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 5.1e-78 295.4 315 47.3
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 1.5e-77 293.9 315 48.3
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 3.7e-76 289.3 247 54.7
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 6.9e-75 285.0 324 47.2
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.2e-74 284.3 176 73.9
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 4.5e-74 282.3 174 80.5
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 7.6e-74 281.6 249 58.2
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 7.9e-71 271.6 278 52.5
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 3.9e-70 269.2 212 62.3
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 5.1e-70 268.9 277 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 4.3e-69 265.8 230 55.7
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 8.2e-68 261.5 174 71.8
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 7.6e-66 255.0 173 66.5
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 6.9e-59 231.9 216 53.7
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 7.9e-55 218.4 317 41.0
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 2.0e-53 213.8 162 63.6
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 1.8e-51 207.2 126 73.8
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.4e-46 191.0 143 60.1
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 2.3e-46 190.3 115 79.1
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 4.1e-43 179.5 147 60.5
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.6e-42 176.8 223 43.0
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 1.9e-40 170.6 142 53.5
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 7.2e-40 168.7 234 41.9
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 1.4e-38 164.5 486 26.7
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 2.0e-37 160.6 322 33.5
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 2.8e-36 156.8 237 38.4
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 9.4e-32 141.7 173 45.1
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 1.3e-20 104.8 61 75.4
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 9.2e-19 98.6 58 75.9
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 3.5e-18 96.7 67 59.7
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.9e-17 93.6 47 83.0
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 8.6e-17 92.0 51 76.5
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 5.7e-13 79.3 53 60.4
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 2.5e-08 63.9 36 66.7
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 5.6e-08 62.8 36 72.2
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 1.6e-07 61.2 31 83.9
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 8.0e-07 58.9 42 61.9
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 1.1e-06 58.5 40 67.5


User provided reference genes

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