Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 3.9e-71 271.6 156 100.0
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 9.9e-67 256.9 156 94.9
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.6e-53 213.0 157 76.4
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 8.1e-53 210.7 157 75.8
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 3.1e-52 208.8 157 79.6
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 6.9e-52 207.6 157 77.7
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.6e-51 205.7 157 67.5
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 9.9e-51 203.8 157 79.6
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.4e-49 199.1 157 77.7
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.2e-48 196.8 157 73.2
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.2e-48 196.8 158 75.3
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.3e-47 193.4 157 75.8
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 3.9e-47 191.8 155 75.5
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 5.6e-46 188.0 145 79.3
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 8.2e-45 184.1 157 74.5
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 3.4e-43 178.7 147 75.5
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 7.6e-43 177.6 141 66.0
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.1e-41 173.7 150 58.0
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 7.1e-41 171.0 148 54.7
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.1e-41 171.0 148 65.5
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 9.3e-41 170.6 157 59.2
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.6e-40 169.9 147 57.1
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.1e-40 169.5 143 59.4
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.6e-40 168.3 157 52.9
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 6.0e-40 167.9 103 73.8
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 7.9e-40 167.5 147 70.7
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.3e-39 166.8 142 69.0
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.3e-39 166.8 103 72.8
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 3.9e-39 165.2 157 52.2
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 3.9e-39 165.2 157 59.2
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 6.7e-39 164.5 157 57.3
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 8.7e-39 164.1 158 62.7
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 8.7e-39 164.1 103 71.8
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 1.9e-38 162.9 160 51.9
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 2.5e-38 162.5 142 72.5
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 2.5e-38 162.5 158 51.9
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 3.3e-38 162.2 159 54.1
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 3.3e-38 162.2 143 55.2
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 5.7e-38 161.4 140 55.7
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 7.4e-38 161.0 158 51.9
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 9.7e-38 160.6 158 65.2
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.2e-37 159.5 127 61.4
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 2.8e-37 159.1 102 65.7
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 3.7e-37 158.7 145 55.9
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 3.7e-37 158.7 122 71.3
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 6.3e-37 157.9 133 72.9
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 6.3e-37 157.9 133 72.9
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 6.3e-37 157.9 133 72.9
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 6.3e-37 157.9 157 58.0
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 6.3e-37 157.9 143 69.2
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 1.1e-36 157.1 145 67.6
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.1e-36 157.1 158 64.6
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.8e-36 156.4 102 68.6
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 3.1e-36 155.6 139 59.7
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 6.9e-36 154.5 123 61.0
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.0e-36 154.1 128 69.5
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 9.0e-36 154.1 157 56.1
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 9.0e-36 154.1 149 67.1
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.2e-35 153.7 149 65.8
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.4e-35 152.1 127 55.1
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 5.9e-35 151.4 143 67.1
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 5.9e-35 151.4 147 54.4
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 7.7e-35 151.0 142 59.9
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.0e-34 150.6 142 59.2
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.0e-34 150.6 154 50.6
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.3e-34 150.2 84 77.4
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.7e-34 149.8 142 54.9
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.7e-34 149.8 138 64.5
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 2.9e-34 149.1 104 68.3
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.9e-34 149.1 120 75.8
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 3.8e-34 148.7 120 74.2
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 5.0e-34 148.3 150 52.0
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 5.0e-34 148.3 129 58.1
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 6.5e-34 147.9 139 52.5
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 6.5e-34 147.9 103 67.0
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 8.5e-34 147.5 145 53.8
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 8.5e-34 147.5 103 68.0
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-33 147.1 139 51.8
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.1e-33 147.1 148 65.5
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.4e-33 146.7 103 68.0
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.9e-33 146.4 89 71.9
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 2.5e-33 146.0 103 66.0
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 2.5e-33 146.0 103 66.0
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 3.2e-33 145.6 103 66.0
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 3.2e-33 145.6 139 51.8
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 4.2e-33 145.2 120 65.0
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 4.2e-33 145.2 127 59.8
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 5.5e-33 144.8 140 52.1
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 5.5e-33 144.8 145 62.8
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 5.5e-33 144.8 149 57.7
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 7.2e-33 144.4 84 73.8
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 9.4e-33 144.1 84 75.0
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 9.4e-33 144.1 84 72.6
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.2e-32 143.7 84 73.8
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.2e-32 143.7 84 73.8
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 1.2e-32 143.7 80 76.2
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-32 143.3 84 72.6
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.6e-32 143.3 137 49.6
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.6e-32 143.3 103 65.0
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.6e-32 143.3 127 68.5
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.1e-32 142.9 84 72.6
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 6.1e-32 141.4 90 71.1
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.0e-31 140.6 73 78.1
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.4e-31 140.2 85 72.9
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.4e-31 140.2 84 71.4
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.4e-31 140.2 153 51.6
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 2.3e-31 139.4 103 65.0
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 2.3e-31 139.4 78 74.4
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 3.0e-31 139.0 83 74.7
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 6.7e-31 137.9 142 52.8
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 5.7e-30 134.8 74 79.7
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.1e-28 128.6 127 52.8
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 3.8e-26 122.1 90 57.8
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.9e-25 119.8 68 79.4
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.6e-24 116.7 130 45.4
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 4.7e-24 115.2 111 70.3
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.4e-23 113.6 106 70.8
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.8e-23 113.2 91 56.0
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 2.8e-21 105.9 114 50.9
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.8e-21 105.9 153 40.5
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 3.7e-21 105.5 53 79.2
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 3.7e-21 105.5 52 82.7
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.1e-20 104.0 96 52.1
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.4e-20 102.8 138 42.8
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 7.0e-20 101.3 97 72.2
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 3.5e-19 99.0 67 62.7
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 7.7e-19 97.8 77 57.1
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 8.5e-18 94.4 96 51.0
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 8.5e-18 94.4 80 53.8
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 3.2e-17 92.4 157 36.9
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 3.2e-17 92.4 121 42.1
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 5.5e-17 91.7 74 52.7
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.5e-14 83.6 70 58.6
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.3e-13 80.5 67 56.7
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 5.3e-12 75.1 38 78.9
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 2.0e-11 73.2 74 43.2
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 5.0e-10 68.6 80 60.0
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.5e-09 67.0 76 42.1
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 8.0e-08 61.2 39 64.1
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 3.0e-07 59.3 47 55.3
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 2.0e-06 56.6 46 52.2
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 4.4e-06 55.5 45 53.3


User provided reference genes

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