Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 0.0e+00 1335.5 674 100.0
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.4e-306 1055.8 677 79.0
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 5.0e-301 1037.3 674 78.5
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 2.7e-294 1015.0 677 75.6
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 3.5e-294 1014.6 666 78.1
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 2.1e-291 1005.4 670 76.7
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 4.5e-273 944.5 677 72.1
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 4.3e-268 927.9 675 70.7
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.0e-261 906.7 677 69.3
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 5.5e-231 804.7 625 65.9
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.0e-229 800.4 611 68.2
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 5.2e-229 798.1 647 63.1
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 6.7e-229 797.7 640 64.5
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.0e-224 781.6 638 62.5
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 5.0e-224 781.6 674 61.0
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 7.2e-223 777.7 640 61.7
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 1.2e-222 776.9 620 64.0
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 1.0e-221 773.9 646 61.3
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 3.0e-221 772.3 638 63.2
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 5.2e-221 771.5 610 64.6
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 7.5e-220 767.7 654 60.7
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 6.3e-219 764.6 653 61.3
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.3e-219 764.6 687 59.4
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.4e-218 762.7 684 58.5
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 4.1e-218 761.9 580 65.2
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 7.0e-218 761.1 632 60.8
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 4.5e-217 758.4 605 63.5
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 2.2e-216 756.1 680 57.4
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.9e-215 753.1 605 63.5
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 6.1e-214 748.0 645 59.8
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 1.0e-213 747.3 640 60.2
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.8e-213 746.5 639 60.3
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 5.7e-212 741.5 659 58.7
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 1.3e-211 740.3 621 59.3
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 4.8e-211 738.4 625 60.5
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 8.3e-211 737.6 637 59.3
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 1.2e-209 733.8 657 57.2
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 2.0e-209 733.0 659 58.7
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 3.5e-209 732.3 639 60.7
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 4.5e-209 731.9 594 61.1
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.7e-208 729.9 645 58.6
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 3.8e-208 728.8 632 59.7
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 5.0e-208 728.4 587 60.8
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 9.5e-207 724.2 598 62.4
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 1.2e-206 723.8 654 57.0
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.4e-205 720.3 650 57.2
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 1.4e-205 720.3 676 55.8
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.4e-205 720.3 546 66.3
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 3.0e-205 719.2 685 55.0
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 8.9e-205 717.6 658 57.9
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 3.1e-202 709.1 639 58.2
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 3.5e-201 705.7 641 55.9
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 4.5e-201 705.3 673 55.7
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 3.8e-200 702.2 658 57.4
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 3.3e-199 699.1 593 59.5
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.6e-198 696.8 623 56.8
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 4.7e-198 695.3 590 59.0
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 1.0e-197 694.1 640 56.4
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 2.3e-197 693.0 644 55.3
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 6.8e-197 691.4 644 55.7
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 5.8e-196 688.3 584 58.4
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 7.5e-196 688.0 653 54.8
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 7.5e-196 688.0 594 58.1
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 9.8e-196 687.6 704 52.7
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 1.3e-195 687.2 652 55.2
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 3.7e-195 685.6 604 58.4
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 7.0e-194 681.4 619 57.0
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 4.0e-189 665.6 775 49.3
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.5e-188 663.7 615 56.1
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 3.7e-187 659.1 571 59.0
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 3.7e-187 659.1 630 54.3
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 3.3e-183 646.0 391 82.4
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 4.3e-183 645.6 503 61.8
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.8e-182 642.9 681 51.2
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.7e-182 642.1 652 52.8
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 8.9e-181 637.9 592 56.9
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 4.4e-180 635.6 643 53.0
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 4.4e-180 635.6 932 42.2
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.3e-179 634.0 595 55.6
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.3e-179 634.0 610 54.9
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.9e-178 630.2 636 51.1
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 9.2e-178 627.9 535 60.0
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 4.3e-175 619.0 647 51.0
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.2e-172 610.9 593 53.3
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.2e-164 584.3 701 49.9
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.3e-163 580.9 672 49.7
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.1e-159 567.8 628 50.2
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.1e-157 559.7 617 49.4
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.2e-156 557.8 647 47.9
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 2.4e-154 550.1 569 49.9
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 3.2e-154 549.7 621 47.0
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 6.7e-152 542.0 572 48.1
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 3.3e-151 539.7 521 53.0
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 6.2e-150 535.4 718 45.5
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.3e-147 527.7 376 66.8
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.6e-142 510.8 556 49.8
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 1.8e-141 507.3 380 64.7
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 2.5e-135 486.9 508 52.0
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.6e-134 484.2 662 41.8
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 5.7e-127 459.1 309 73.8
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 1.5e-119 434.5 564 46.8
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.5e-116 424.5 529 45.7
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 3.2e-114 416.8 294 73.5
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.0e-112 411.8 434 53.2
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.4e-109 401.4 295 63.7
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 4.5e-108 396.4 310 62.3
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 5.0e-107 392.9 324 60.2
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 2.6e-103 380.6 352 55.4
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.7e-102 377.9 330 57.6
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 3.2e-98 363.6 484 41.9
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 7.5e-95 352.4 431 41.8
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.9e-91 340.5 421 48.7
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 5.0e-91 339.7 351 51.6
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 3.3e-90 337.0 514 37.5
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 9.8e-87 325.5 482 39.8
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.6e-81 308.1 331 53.5
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 4.0e-80 303.5 193 80.3
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 7.0e-77 292.7 652 32.7
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 1.2e-76 292.0 297 55.9
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 6.0e-68 263.1 592 29.7
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 6.2e-65 253.1 400 40.5
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 6.2e-65 253.1 287 50.5
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.1e-65 252.7 209 60.3
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 2.0e-63 248.1 151 80.8
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 2.6e-63 247.7 155 75.5
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 6.6e-59 233.0 154 73.4
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.2e-55 222.2 146 69.2
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.4e-54 216.1 134 74.6
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 7.1e-53 213.0 303 41.9
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 6.2e-49 199.9 273 45.8
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 2.4e-48 198.0 328 41.8
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 4.0e-48 197.2 241 48.5
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.2e-44 185.7 193 52.3
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.7e-43 181.8 196 48.5
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 6.9e-40 169.9 244 43.9
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 4.6e-36 157.1 117 66.7
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 8.1e-33 146.4 91 74.7
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.2e-31 142.5 83 81.9
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.0e-31 141.7 83 77.1
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 2.9e-30 137.9 298 33.2
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 2.5e-26 124.8 286 34.3
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.3e-22 112.5 94 57.4
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 2.2e-22 111.7 104 55.8
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.5e-22 110.2 144 44.4
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 8.4e-22 109.8 69 73.9
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.9e-21 108.6 136 49.3
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-20 105.5 69 72.5
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.3e-19 102.4 99 54.5
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.7e-18 97.1 80 60.0
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 2.9e-14 84.7 185 33.0
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.9e-13 82.0 90 53.3
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.3e-11 75.1 79 48.1
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.4e-08 65.9 96 40.6
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 3.8e-06 57.8 43 60.5


User provided reference genes

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