Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 0.0e+00 1474.9 716 100.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 0.0e+00 1147.9 720 77.4
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1146.7 716 78.5
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 0.0e+00 1142.9 731 77.2
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 0.0e+00 1138.6 720 77.8
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 0.0e+00 1135.2 723 77.9
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1133.2 718 78.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 0.0e+00 1121.3 671 80.0
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 0.0e+00 1112.1 671 79.3
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 0.0e+00 1086.6 719 73.6
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.1e-290 1003.0 677 71.6
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.7e-286 989.2 677 70.9
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 8.3e-286 986.9 674 71.1
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.5e-282 976.1 729 66.5
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.8e-281 971.8 677 69.4
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 7.8e-276 953.7 738 63.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 7.3e-274 947.2 777 63.3
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.1e-269 931.4 725 63.0
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 4.1e-269 931.4 701 64.9
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 9.2e-269 930.2 717 65.4
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.2e-268 929.9 724 62.6
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-267 926.8 724 65.3
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.1e-266 923.3 688 66.9
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 5.6e-266 921.0 724 63.3
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.8e-264 916.0 733 61.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.8e-263 911.0 689 64.7
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.3e-262 909.8 733 61.8
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.3e-262 909.8 710 65.6
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.9e-262 907.9 729 61.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.2e-261 905.2 731 61.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 4.6e-260 901.4 768 60.4
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.6e-257 891.7 713 62.3
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 3.1e-256 888.6 721 60.7
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.0e-256 888.3 674 63.2
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.7e-254 882.9 715 61.0
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 2.2e-254 882.5 733 59.3
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.9e-254 882.1 710 64.2
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.2e-252 876.7 732 59.7
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.6e-252 876.3 724 59.5
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.3e-251 873.2 731 59.6
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.7e-251 872.8 739 59.1
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 3.0e-251 872.1 726 59.9
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.9e-250 869.4 750 58.1
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.5e-250 869.0 735 58.8
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.3e-250 867.5 712 59.0
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 4.8e-249 864.8 712 59.3
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.4e-248 863.2 665 63.3
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 6.9e-248 860.9 715 59.0
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 4.5e-247 858.2 715 58.7
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 3.8e-246 855.1 726 60.1
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 8.4e-246 854.0 681 60.4
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.4e-245 852.4 695 59.3
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.2e-245 851.7 682 61.3
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.7e-244 849.0 682 61.1
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.7e-244 849.0 716 59.1
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 3.5e-244 848.6 723 58.9
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.0e-244 847.8 682 61.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 3.9e-243 845.1 724 57.5
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.7e-243 844.3 766 56.8
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.5e-242 843.2 674 61.0
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 5.6e-242 841.3 682 59.8
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.8e-241 839.0 715 58.7
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.8e-241 838.2 712 59.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.1e-240 837.0 746 56.3
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.8e-240 836.3 687 59.5
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.1e-240 835.5 664 63.3
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.1e-240 835.5 687 59.5
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.5e-239 833.2 723 57.0
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 2.9e-238 828.9 750 55.7
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 6.0e-236 821.2 607 64.6
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.8e-235 819.7 714 57.3
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 8.7e-235 817.4 721 55.9
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-234 817.0 664 62.5
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 2.5e-234 815.8 684 59.6
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 4.3e-234 815.1 894 49.8
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 9.6e-234 813.9 724 57.0
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 4.1e-232 808.5 684 57.5
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.5e-231 806.6 707 57.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.3e-230 803.5 683 57.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.9e-229 799.7 731 54.6
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.2e-228 797.0 683 57.4
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.2e-228 797.0 677 57.6
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.1e-224 783.9 665 57.1
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.1e-224 782.3 591 64.6
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.9e-224 781.2 624 60.6
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 9.0e-224 780.8 679 56.3
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 5.0e-222 775.0 746 52.8
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.5e-222 774.2 684 55.1
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.5e-221 772.7 615 61.6
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.5e-221 771.5 685 54.7
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.3e-219 766.1 663 55.4
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 6.7e-219 764.6 663 55.8
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.7e-219 764.6 685 54.3
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.3e-218 762.3 702 54.0
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 7.4e-218 761.1 670 55.7
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 9.7e-218 760.8 681 56.7
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.1e-216 757.3 676 54.9
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 7.7e-215 751.1 656 55.6
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.3e-214 750.4 657 55.3
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.9e-214 749.2 735 52.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.8e-214 748.8 657 55.3
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.8e-214 748.8 657 55.3
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.5e-213 746.1 720 52.1
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 5.5e-213 745.0 719 52.6
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.9e-211 738.8 685 53.0
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 6.7e-211 738.0 720 51.9
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.8e-211 737.6 719 51.6
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.1e-210 737.3 671 53.7
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.6e-210 736.1 669 52.9
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 9.1e-208 727.6 687 52.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 4.5e-207 725.3 733 50.5
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 8.5e-206 721.1 593 59.9
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 2.1e-204 716.5 740 50.4
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.7e-204 716.1 685 52.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.1e-202 710.7 694 52.9
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.6e-202 709.5 678 51.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 4.4e-202 708.8 638 53.3
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.1e-200 702.6 741 48.6
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.3e-198 697.2 685 52.8
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.7e-198 696.8 661 54.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-197 694.1 684 51.8
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 8.0e-196 688.0 536 63.1
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.6e-194 682.9 677 53.6
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 5.4e-192 675.2 617 55.6
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.5e-190 668.3 695 49.5
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 9.2e-176 621.3 673 47.7
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.2e-175 620.9 684 47.7
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.3e-174 617.5 710 47.9
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.7e-174 617.1 556 56.8
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.1e-172 610.1 528 56.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 9.8e-170 601.3 684 46.6
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 6.0e-151 538.9 542 49.8
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 9.0e-139 498.4 388 64.2
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 2.7e-135 486.9 320 68.8
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.9e-129 466.8 426 50.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 6.5e-121 439.1 392 54.8
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 3.8e-113 413.3 298 63.4
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 5.7e-101 372.9 435 42.3
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 2.8e-100 370.5 231 74.5
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 4.2e-96 356.7 390 46.9
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.0e-93 347.8 450 42.2
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.3e-89 335.1 312 50.0
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.7e-87 327.4 566 34.3
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.1e-79 301.2 551 33.6
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.0e-74 284.6 580 32.2
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.3e-70 271.2 165 78.8
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.3e-64 250.8 328 43.6
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.0e-61 241.5 209 59.3
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 4.3e-56 223.8 148 69.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.4e-54 218.8 219 51.6
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 5.0e-49 200.3 241 44.4
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 4.3e-48 197.2 226 46.0
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.6e-45 188.0 121 69.4
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-43 182.6 133 65.4
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.6e-42 178.7 114 66.7
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-38 164.5 99 75.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-38 164.5 99 75.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-38 164.5 99 75.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 2.2e-36 158.3 180 48.3
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.2e-36 158.3 378 29.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 7.8e-34 149.8 212 42.5
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 5.6e-32 143.7 280 35.7
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 9.9e-29 132.9 148 51.4
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.6e-26 125.6 243 32.9
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 5.8e-21 107.1 226 35.0
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 9.9e-21 106.3 73 71.2
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 7.1e-19 100.1 243 28.0
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.7e-18 98.2 59 69.5
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-16 92.8 123 39.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.8e-15 87.4 204 32.8
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-12 77.8 48 64.6
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-12 77.8 48 64.6
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 3.8e-12 77.8 54 68.5


User provided reference genes

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