Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 0.0e+00 1145.2 558 100.0
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 0.0e+00 1093.6 568 93.8
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 0.0e+00 1086.2 555 94.8
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 568 88.0
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 568 87.9
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 7.9e-300 1033.1 565 87.6
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 3.9e-299 1030.8 568 87.0
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 8.7e-299 1029.6 568 87.5
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.5e-298 1028.1 568 87.3
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 9.6e-298 1026.2 568 85.9
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.1e-297 1025.0 568 86.6
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 2.1e-297 1025.0 568 86.6
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.2e-295 1019.2 568 85.9
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.2e-293 1011.1 568 85.2
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 568 84.9
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 3.5e-292 1007.7 568 84.7
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.0e-291 1006.1 568 84.5
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 8.7e-291 1003.0 568 85.4
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.1e-290 1002.7 568 84.5
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 1.9e-290 1001.9 568 84.2
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 3.7e-289 997.7 568 84.9
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.7e-289 997.7 568 85.0
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 8.2e-289 996.5 568 83.6
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.1e-288 996.1 568 83.6
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.4e-288 995.7 568 84.5
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.2e-287 992.6 561 84.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.5e-287 992.3 564 83.5
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.0e-287 991.9 568 84.2
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 3.4e-287 991.1 567 83.4
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 3.4e-287 991.1 563 84.0
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.5e-287 990.7 563 84.5
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 4.5e-287 990.7 557 85.3
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 5.9e-287 990.3 568 82.7
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.4e-285 985.7 571 84.2
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.9e-285 985.3 561 84.0
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.5e-285 984.9 563 84.4
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.2e-285 984.6 563 83.8
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 4.2e-285 984.2 567 84.1
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 9.4e-285 983.0 568 84.0
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.6e-284 982.2 563 84.7
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 4.6e-284 980.7 567 84.0
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.1e-284 980.3 563 83.7
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 7.9e-284 979.9 568 82.2
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 7.9e-284 979.9 568 82.2
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 7.9e-284 979.9 563 83.7
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.0e-283 979.5 563 83.7
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.8e-283 978.8 568 82.9
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 2.3e-283 978.4 561 83.4
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 2.3e-283 978.4 561 83.6
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 3.3e-282 974.5 563 82.8
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 4.3e-282 974.2 567 83.1
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 7.4e-282 973.4 564 83.5
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 9.7e-282 973.0 561 83.1
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.3e-281 972.6 568 82.4
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.7e-281 972.2 567 82.7
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 2.2e-281 971.8 563 83.7
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-280 969.5 563 82.4
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-280 969.5 563 82.4
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.4e-280 968.4 565 81.6
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 5.3e-280 967.2 567 82.4
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.2e-279 966.1 561 83.2
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.4e-279 964.5 568 80.8
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.3e-278 962.6 568 81.2
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 3.8e-278 961.1 564 82.1
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 5.0e-278 960.7 563 82.6
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 3.2e-277 958.0 562 82.2
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 5.5e-277 957.2 564 82.1
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 5.5e-277 957.2 566 81.8
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 1.2e-276 956.1 564 81.9
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-276 956.1 564 81.7
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-276 956.1 564 81.9
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-276 956.1 564 81.9
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.2e-276 956.1 568 80.5
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.6e-276 955.7 568 80.5
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.1e-276 955.3 564 81.6
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.6e-276 954.5 565 80.0
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 4.7e-276 954.1 564 81.7
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 6.1e-276 953.7 564 81.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.4e-275 952.6 564 81.4
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.8e-275 952.2 564 81.4
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.8e-275 952.2 564 81.4
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.3e-275 951.8 569 80.1
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 3.0e-275 951.4 564 81.6
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.0e-274 948.7 571 80.9
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 9.7e-274 946.4 550 82.4
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.3e-273 946.0 565 79.1
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 2.8e-273 944.9 564 80.3
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 6.3e-273 943.7 561 80.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.4e-272 942.6 564 80.7
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.4e-272 942.6 565 79.3
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.4e-272 941.8 565 80.5
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.1e-272 941.0 552 81.2
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 7.0e-272 940.3 564 80.5
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 5.9e-271 937.2 556 80.8
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.3e-270 936.0 550 82.0
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.3e-270 936.0 564 79.4
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.7e-270 935.6 565 80.2
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.7e-270 935.6 564 79.3
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.2e-270 935.3 568 80.8
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 2.9e-270 934.9 564 80.0
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 3.8e-270 934.5 570 80.5
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 5.0e-270 934.1 551 81.3
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.1e-269 932.9 564 79.8
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 4.2e-269 931.0 564 80.0
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.2e-269 931.0 549 80.7
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 5.5e-269 930.6 557 80.4
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 9.4e-269 929.9 564 79.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.6e-268 929.1 567 80.2
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.0e-267 926.4 564 79.6
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.4e-267 926.0 549 80.1
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.9e-267 924.5 554 80.3
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.6e-266 921.8 534 82.2
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 3.3e-266 921.4 562 81.0
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 4.4e-266 921.0 562 81.1
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.2e-263 912.9 564 77.5
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.9e-262 908.3 568 75.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 8.5e-262 906.7 564 76.6
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.5e-261 906.0 564 76.8
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.0e-259 898.3 564 76.2
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 3.3e-258 894.8 568 74.6
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.7e-255 885.2 563 79.0
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.9e-253 879.0 565 74.7
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 3.2e-253 878.2 571 73.9
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.2e-253 878.2 571 73.4
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 8.8e-251 870.2 570 74.4
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 7.5e-250 867.1 568 72.4
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 9.8e-250 866.7 564 75.5
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-248 862.1 524 79.4
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.0e-246 856.7 567 71.8
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 6.6e-246 854.0 559 73.5
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.6e-244 849.4 558 73.5
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.5e-242 842.8 566 71.9
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.4e-242 841.3 565 70.8
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.5e-237 826.2 565 70.1
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 4.9e-233 811.2 562 70.6
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.1e-232 810.1 557 73.6
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.3e-230 803.1 566 68.7
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.6e-226 788.9 417 89.0
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 3.7e-225 785.0 564 67.7
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 5.6e-221 771.2 469 77.6
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.3e-198 696.0 563 63.8
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.6e-194 682.6 567 62.6
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-193 680.2 425 76.2
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.6e-172 610.1 373 76.7
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.0e-166 590.9 417 71.2
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.5e-165 586.3 541 52.7
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.8e-156 556.2 329 79.0
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.5e-154 550.4 532 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.5e-152 543.9 488 51.6
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 7.7e-146 521.5 292 82.5
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 9.4e-136 488.0 418 56.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.0e-129 465.7 557 48.3
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.5e-128 463.4 319 70.8
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.1e-127 458.8 558 48.0
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 5.4e-115 419.1 468 51.3
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 8.4e-84 315.5 213 72.3
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 1.8e-78 297.7 540 38.3
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 4.2e-75 286.6 487 34.9
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.4e-62 245.0 156 73.1
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.3e-60 238.4 138 80.4
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.4e-59 235.0 138 79.0
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.2e-50 205.3 132 77.3
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.1e-46 190.3 133 72.2
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 2.2e-44 184.5 128 68.8
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.9e-44 184.1 128 72.7
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 3.6e-42 177.2 166 59.0
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-41 175.3 166 59.0
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.3e-41 174.5 166 59.0
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 2.6e-40 171.0 166 58.4
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.8e-31 141.0 346 28.0
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 5.3e-30 136.7 94 69.1
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-28 131.3 213 39.9
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.0e-25 122.5 495 25.9
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.2e-23 114.8 77 68.8
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.0e-20 105.9 184 39.7
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 6.5e-20 103.2 166 41.0
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.2e-16 92.4 76 56.6
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 5.7e-16 90.1 67 64.2
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 8.6e-12 76.3 46 69.6
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.2e-10 72.4 44 72.7
Lalb_Chr01g0000571 Lupinus albus HOM05D000597 ORTHO05D000603 4.1e-06 57.4 174 26.4
Duzib187G1275 Durio zibethinus HOM05D000597 ORTHO05D006307 7.0e-06 56.6 143 26.6
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 9.2e-06 56.2 32 81.2
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 9.2e-06 56.2 32 81.2


User provided reference genes

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