Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 2.7e-117 425.6 259 100.0
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 5.1e-84 315.1 261 72.0
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 4.3e-83 312.0 260 66.5
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 4.8e-82 308.5 261 67.4
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 4.0e-81 305.4 262 72.1
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.5e-75 287.0 248 63.7
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 7.4e-75 284.6 262 59.2
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 6.2e-74 281.6 257 59.5
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 6.9e-73 278.1 257 59.1
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.0e-72 276.6 234 68.8
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 5.8e-72 275.0 234 69.7
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 9.9e-72 274.2 257 60.3
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 2.2e-71 273.1 227 63.9
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 5.5e-70 268.5 257 62.6
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.2e-69 267.3 259 59.8
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.6e-69 266.9 259 56.4
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 4.6e-69 265.4 257 57.6
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.0e-68 264.2 258 58.5
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 3.0e-68 262.7 247 61.5
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.9e-67 260.0 259 58.7
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.9e-67 260.0 243 57.2
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 2.5e-67 259.6 265 60.8
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 3.3e-67 259.2 258 55.4
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 3.3e-67 259.2 258 58.1
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 7.4e-67 258.1 258 61.6
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 7.4e-67 258.1 256 54.3
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 9.6e-67 257.7 256 54.7
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.3e-66 257.3 215 62.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.3e-66 257.3 243 57.2
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.3e-66 257.3 256 54.3
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.6e-66 256.9 238 61.3
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 8.2e-66 254.6 215 65.6
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 5.3e-65 251.9 303 59.1
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 9.0e-65 251.1 219 61.6
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.0e-65 251.1 215 64.7
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.2e-64 250.8 272 58.5
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.2e-64 250.8 261 52.5
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.5e-64 250.4 215 64.7
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.3e-63 247.3 238 55.5
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.2e-63 246.5 256 52.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 4.9e-63 245.4 223 58.3
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 8.4e-63 244.6 259 57.5
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.1e-62 244.2 259 52.5
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.9e-62 243.4 255 53.3
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.9e-62 243.4 243 54.3
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.9e-62 243.4 214 62.1
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.5e-62 243.0 283 53.4
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 5.5e-62 241.9 261 53.3
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 5.5e-62 241.9 253 53.4
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 7.1e-62 241.5 259 53.7
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 9.3e-62 241.1 242 60.3
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.2e-61 240.7 257 53.3
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.2e-61 240.7 249 59.0
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.6e-61 240.4 286 53.1
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 1.6e-61 240.4 249 64.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.1e-61 240.0 275 50.9
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.7e-61 239.6 247 64.4
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 3.5e-61 239.2 257 53.3
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 4.6e-61 238.8 219 65.3
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.6e-61 238.8 254 58.3
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 6.0e-61 238.4 245 53.5
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.0e-60 237.7 247 64.0
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.3e-60 237.3 223 61.4
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.3e-60 236.5 264 51.1
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.0e-60 236.1 258 56.6
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.9e-60 235.7 247 63.2
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.9e-60 235.7 260 56.9
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 3.9e-60 235.7 215 59.1
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.7e-60 235.0 260 56.9
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.9e-59 233.4 238 58.0
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.5e-59 233.0 261 55.6
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.3e-59 232.3 274 48.5
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 4.3e-59 232.3 255 52.9
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 5.7e-59 231.9 261 55.2
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 5.7e-59 231.9 261 55.2
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 5.7e-59 231.9 261 55.2
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 9.7e-59 231.1 204 59.3
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.3e-58 230.7 267 55.8
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.6e-58 230.3 263 54.0
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 3.7e-58 229.2 227 59.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 4.8e-58 228.8 225 57.3
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.8e-58 228.8 266 50.4
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 2.4e-57 226.5 282 57.1
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 4.1e-57 225.7 216 54.6
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 4.1e-57 225.7 275 49.8
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 6.9e-57 224.9 237 57.4
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 9.0e-57 224.6 261 54.0
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 9.0e-57 224.6 219 59.4
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.5e-56 223.8 239 57.3
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.5e-56 223.8 239 57.3
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 3.4e-56 222.6 227 53.3
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 7.7e-56 221.5 239 52.7
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-55 220.3 268 59.3
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 2.2e-55 219.9 258 50.4
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 6.5e-55 218.4 261 62.1
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-54 217.2 269 59.9
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-54 217.2 266 58.3
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.4e-54 217.2 239 59.0
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.4e-54 217.2 266 56.8
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 2.5e-54 216.5 267 58.4
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.2e-54 216.1 194 58.8
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.2e-54 216.1 250 53.2
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 5.5e-54 215.3 258 48.8
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 3.0e-52 209.5 259 53.3
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 3.0e-52 209.5 262 56.5
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 6.7e-52 208.4 260 56.5
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.1e-51 207.6 225 60.9
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.5e-51 207.2 256 49.2
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 2.5e-51 206.5 185 63.2
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 7.4e-51 204.9 207 59.4
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 7.4e-51 204.9 186 60.2
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 7.4e-51 204.9 209 53.6
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.7e-50 203.8 186 55.4
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 3.1e-49 199.5 213 50.2
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.0e-48 196.8 224 50.4
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.0e-47 194.5 187 65.8
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.1e-46 191.0 240 47.9
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 4.2e-46 189.1 213 52.6
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 4.2e-46 189.1 161 69.6
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.2e-45 187.6 211 49.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.0e-44 184.5 256 46.9
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.8e-44 183.7 184 55.4
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.1e-43 181.0 169 63.9
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.5e-43 180.6 240 45.4
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.3e-43 179.5 204 55.4
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.2e-42 176.8 215 48.4
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 3.7e-42 176.0 264 52.3
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.1e-41 172.6 199 54.3
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.2e-40 171.0 148 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 5.9e-40 168.7 152 54.6
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.1e-38 164.5 197 49.7
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.0e-37 158.3 205 49.8
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 5.2e-36 155.6 156 50.6
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.1e-35 154.5 105 69.5
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.8e-34 149.8 186 47.3
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 2.4e-33 146.7 204 45.1
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 6.5e-31 138.7 261 52.5
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.5e-31 138.7 100 66.0
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 6.5e-31 138.7 108 61.1
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 4.2e-30 136.0 134 55.2
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 3.0e-28 129.8 163 43.6
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 8.8e-28 128.3 147 52.4
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.2e-27 127.9 63 88.9
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.3e-26 124.4 140 54.3
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 6.3e-26 122.1 149 52.3
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.6e-24 117.5 145 55.9
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 5.9e-24 115.5 164 50.6
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 1.3e-23 114.4 160 45.0
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.1e-22 111.3 149 55.7
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 3.2e-22 109.8 137 51.1
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 7.2e-22 108.6 153 53.6
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 4.7e-21 105.9 108 48.1
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.5e-19 100.9 158 47.5
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 2.6e-19 100.1 93 50.5
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.3e-18 97.8 151 49.7
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 4.8e-18 95.9 118 40.7
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 2.3e-15 87.0 89 67.4
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 2.9e-15 86.7 253 30.8
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.1e-14 84.7 97 67.0
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 7.2e-14 82.0 97 58.8
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 2.3e-12 77.0 72 56.9
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 2.3e-12 77.0 140 43.6
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 4.0e-12 76.3 48 64.6
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.6e-11 73.6 82 47.6
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.5e-11 72.0 72 50.0
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 7.5e-11 72.0 104 40.4
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.3e-10 68.6 70 50.0
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 1.6e-08 64.3 99 42.4
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 4.5e-08 62.8 98 39.8
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 4.5e-08 62.8 74 51.4
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 7.8e-08 62.0 50 54.0
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.1e-06 58.2 38 71.1
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 1.9e-06 57.4 51 47.1
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 1.9e-06 57.4 47 48.9


User provided reference genes

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