Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 0.0e+00 1137.5 676 100.0
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 1.4e-237 826.6 678 71.7
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 9.4e-231 803.9 702 68.5
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 1.6e-225 786.6 685 66.9
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 6.1e-222 774.6 702 69.5
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 4.8e-219 765.0 702 65.8
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 1.6e-217 760.0 602 72.3
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 8.9e-213 744.2 726 62.7
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.7e-192 676.8 700 61.7
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 8.6e-192 674.5 690 65.9
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 3.3e-191 672.5 689 63.7
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 3.4e-188 662.5 640 64.4
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 9.6e-159 564.7 684 51.2
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 2.9e-147 526.6 703 51.9
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 7.4e-143 511.9 732 47.7
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.2e-140 504.6 689 50.4
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.0e-140 503.8 691 50.9
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.9e-138 497.3 689 49.5
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 2.5e-138 496.9 697 49.2
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 3.2e-138 496.5 690 49.7
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 4.2e-138 496.1 717 46.3
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 1.6e-137 494.2 683 49.8
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 1.0e-136 491.5 704 45.7
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 2.3e-136 490.3 707 48.9
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 8.2e-134 481.9 698 46.0
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 6.9e-133 478.8 686 48.1
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 2.0e-132 477.2 705 46.2
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 3.4e-132 476.5 677 48.4
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.4e-130 471.1 699 47.2
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 4.7e-129 466.1 707 46.1
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 6.1e-129 465.7 683 49.5
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 6.7e-128 462.2 707 44.0
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 8.8e-128 461.8 693 45.9
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 2.6e-127 460.3 690 45.8
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 2.2e-126 457.2 692 48.8
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.9e-124 449.1 686 46.5
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 2.9e-123 446.8 689 50.8
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 3.8e-123 446.4 694 50.9
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 3.8e-123 446.4 689 50.5
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 5.0e-123 446.0 751 44.1
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 8.0e-121 438.7 677 46.4
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 1.1e-119 434.9 707 46.0
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 4.4e-119 433.0 685 45.8
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 8.2e-118 428.7 716 43.0
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 1.1e-117 428.3 731 44.0
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 1.1e-117 428.3 722 42.9
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.4e-117 427.9 682 45.5
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 2.4e-117 427.2 712 50.0
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 5.3e-117 426.0 680 47.5
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 1.2e-116 424.9 686 45.5
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 2.0e-116 424.1 688 43.5
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 2.5e-114 417.2 721 43.0
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 5.5e-114 416.0 689 43.3
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 5.2e-112 409.5 725 41.7
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 5.2e-112 409.5 688 44.9
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 5.7e-111 406.0 599 49.1
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.3e-110 404.8 742 41.5
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 4.8e-110 402.9 685 44.5
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 6.3e-110 402.5 724 42.7
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.1e-109 400.2 556 48.7
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 1.3e-107 394.8 635 44.7
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 8.5e-107 392.1 681 43.8
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 6.1e-105 386.0 731 41.0
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 1.8e-104 384.4 682 43.4
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 2.3e-104 384.0 703 42.7
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 6.8e-104 382.5 747 40.7
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.6e-103 380.6 594 46.0
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 7.5e-103 379.0 670 44.0
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 1.3e-102 378.3 655 42.9
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.4e-101 374.8 717 40.2
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 4.1e-101 373.2 682 43.0
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 3.8e-99 366.7 559 50.4
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 8.6e-99 365.5 704 41.9
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 9.5e-98 362.1 584 45.7
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.6e-97 360.1 690 41.4
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 4.7e-97 359.8 687 40.9
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 5.7e-95 352.8 271 71.6
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 5.7e-95 352.8 679 45.9
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.8e-93 347.8 665 42.0
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.5e-90 338.2 690 42.0
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 5.8e-87 326.2 701 39.2
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.4e-85 320.9 675 43.0
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.6e-84 316.6 672 37.8
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 1.7e-83 314.7 692 35.7
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 6.6e-83 312.8 684 37.6
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.9e-82 311.2 681 37.6
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 4.3e-82 310.1 654 40.5
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 4.3e-82 310.1 703 42.8
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 5.8e-79 299.7 682 37.2
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 1.9e-77 294.7 708 42.2
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 7.8e-76 289.3 520 42.3
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 3.9e-75 287.0 668 34.9
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 3.3e-74 283.9 754 35.0
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 1.2e-73 282.0 595 38.3
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 6.2e-73 279.6 719 35.0
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.2e-70 271.2 432 42.6
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 5.4e-69 266.5 683 33.5
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 2.1e-68 264.6 696 35.9
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 3.5e-68 263.8 669 36.2
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 7.8e-68 262.7 516 40.5
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 6.6e-67 259.6 681 33.2
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 7.3e-66 256.1 716 33.4
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.2e-65 255.4 337 49.6
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.2e-65 255.4 714 34.6
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 3.6e-65 253.8 684 33.2
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 4.7e-65 253.4 680 32.6
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 3.1e-64 250.8 687 33.0
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 4.4e-63 246.9 420 40.7
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.2e-62 244.6 491 40.5
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.1e-61 242.3 589 37.9
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 5.1e-59 233.4 719 32.3
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 3.6e-49 200.7 349 44.4
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 1.7e-46 191.8 613 33.6
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 1.1e-42 179.1 413 40.2
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 3.3e-42 177.6 347 41.2
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 6.2e-41 173.3 671 30.3
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.2e-41 173.3 327 42.5
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 2.4e-40 171.4 221 49.3
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 5.5e-37 160.2 261 45.2
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 6.5e-30 136.7 190 47.9
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 4.6e-28 130.6 629 27.3
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 8.2e-25 119.8 211 39.3
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 1.0e-22 112.8 663 26.8
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 3.2e-21 107.8 132 48.5
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 7.2e-21 106.7 162 40.7
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.7e-20 104.8 112 54.5
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 3.6e-20 104.4 112 54.5
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.7e-18 97.1 136 44.9
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 2.8e-17 94.7 675 24.9
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 2.2e-14 85.1 133 45.1
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 9.4e-13 79.7 148 40.5
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 3.6e-12 77.8 592 24.8
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 4.7e-12 77.4 622 25.6


User provided reference genes

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