Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 0.0e+00 1244.6 602 100.0
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1130.5 602 89.2
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1129.8 602 89.0
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 0.0e+00 1124.4 602 88.2
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 0.0e+00 1112.8 602 87.7
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 0.0e+00 1110.1 602 86.9
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 0.0e+00 1103.2 602 86.4
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 0.0e+00 1091.6 603 85.7
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 3.1e-310 1067.8 603 84.4
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 1.3e-295 1019.2 605 79.8
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 2.2e-292 1008.4 605 79.7
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 6.5e-292 1006.9 605 78.7
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 6.5e-292 1006.9 604 78.6
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 6.5e-292 1006.9 604 78.6
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 2.7e-290 1001.5 593 79.6
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 3.6e-290 1001.1 605 78.3
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.2e-288 996.1 605 77.9
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.3e-287 992.6 605 77.5
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.1e-286 989.6 605 77.4
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 2.4e-286 988.4 605 76.9
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 4.1e-286 987.6 605 77.9
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.2e-284 981.9 605 77.7
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 3.2e-283 978.0 605 76.9
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 7.2e-283 976.9 605 77.4
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 2.1e-282 975.3 605 76.2
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.3e-281 971.8 604 76.2
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 1.2e-280 969.5 604 76.7
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 5.4e-278 960.7 607 73.8
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 5.4e-278 960.7 605 75.7
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 8.0e-274 946.8 581 76.4
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 1.4e-273 946.0 612 72.7
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 4.0e-273 944.5 604 74.3
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.2e-264 916.4 605 71.2
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 2.6e-264 915.2 605 73.2
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 4.4e-264 914.4 605 70.7
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 7.5e-264 913.7 603 71.3
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 3.7e-263 911.4 605 71.4
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 5.4e-262 907.5 605 70.1
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 5.0e-260 901.0 605 71.9
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 6.2e-258 894.0 605 69.6
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.8e-249 865.9 605 66.3
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.5e-248 862.8 605 68.1
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 3.4e-248 861.7 592 68.9
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.7e-228 796.2 536 71.6
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 8.7e-228 793.9 618 62.3
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.4e-225 786.6 606 63.0
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 5.8e-224 781.2 606 62.4
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 9.9e-224 780.4 609 63.1
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 2.2e-215 752.7 608 60.4
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 3.8e-215 751.9 607 60.1
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.9e-214 749.6 608 59.9
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 6.0e-213 744.6 606 59.2
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 6.0e-213 744.6 606 59.2
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 5.1e-212 741.5 618 59.2
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.2e-208 730.3 528 65.7
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.4e-206 723.4 611 58.6
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 2.7e-197 692.6 608 56.4
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.4e-169 599.7 611 50.4
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 4.2e-166 589.0 615 48.3
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 5.0e-159 565.5 611 46.5
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 2.2e-154 550.1 375 69.9
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.3e-122 444.5 239 83.3
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.1e-121 441.4 710 36.6
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 7.1e-121 438.7 275 75.3
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 3.5e-96 356.7 246 69.9
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 7.4e-94 349.0 243 69.1
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 3.1e-92 343.6 215 76.3
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 1.6e-88 331.3 254 62.2
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 3.3e-86 323.6 194 80.9
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 9.1e-84 315.5 218 67.4
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 2.6e-83 313.9 243 62.1
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.0e-82 312.0 243 61.7
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 4.2e-81 306.6 223 66.4
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 2.3e-79 300.8 224 66.1
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 7.4e-78 295.8 223 64.6
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 9.7e-70 268.9 225 56.9
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 1.1e-65 255.4 257 53.3
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 7.0e-60 236.1 130 89.2
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 4.8e-53 213.4 170 60.0
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.1e-41 175.6 384 33.9
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.5e-41 175.3 372 35.2
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 9.5e-41 172.6 362 34.3
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 2.8e-40 171.0 374 33.4
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 2.8e-40 171.0 356 34.8
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 6.1e-40 169.9 370 33.2
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 2.3e-39 167.9 376 31.4
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 3.0e-39 167.5 376 31.4
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 3.0e-39 167.5 373 32.4
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 6.8e-39 166.4 350 30.6
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 8.9e-39 166.0 385 32.2
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.2e-38 165.6 372 31.7
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.2e-38 165.6 390 32.1
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.5e-38 165.2 370 31.9
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.5e-38 165.2 369 32.2
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 2.6e-38 164.5 377 31.8
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 3.4e-38 164.1 386 31.6
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 3.4e-38 164.1 372 32.3
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 5.7e-38 163.3 368 34.0
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 7.5e-38 162.9 368 32.3
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 7.5e-38 162.9 370 32.7
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.3e-37 162.2 374 32.4
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 1.7e-37 161.8 188 51.1
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 2.2e-37 161.4 365 31.5
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 2.2e-37 161.4 365 31.5
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 2.9e-37 161.0 386 32.1
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 8.3e-37 159.5 375 32.0
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 8.3e-37 159.5 368 31.8
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.1e-36 159.1 371 30.7
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.1e-36 159.1 369 30.4
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.4e-36 158.7 381 31.0
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.8e-36 158.3 370 33.0
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 1.8e-36 158.3 365 32.3
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 2.4e-36 157.9 395 32.7
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.1e-36 157.1 369 30.4
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 5.4e-36 156.8 371 30.5
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 7.0e-36 156.4 378 31.2
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 7.0e-36 156.4 370 31.9
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 1.2e-35 155.6 398 32.4
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.0e-35 154.8 383 30.0
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 2.0e-35 154.8 370 30.5
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.7e-35 154.5 369 31.7
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 3.5e-35 154.1 388 31.7
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 7.8e-35 152.9 370 31.4
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 7.8e-35 152.9 372 31.7
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 2.3e-34 151.4 393 31.8
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.3e-34 151.4 368 33.4
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 3.9e-34 150.6 371 32.3
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 5.0e-34 150.2 388 29.6
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 5.0e-34 150.2 367 31.3
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 6.6e-34 149.8 378 31.0
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 6.6e-34 149.8 376 30.6
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.9e-33 148.3 370 30.3
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.5e-33 147.9 377 30.8
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 3.3e-33 147.5 365 30.4
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 4.3e-33 147.1 362 32.0
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 4.3e-33 147.1 383 31.1
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 9.5e-33 146.0 364 31.6
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 9.5e-33 146.0 370 32.7
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 9.5e-33 146.0 350 32.6
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.2e-32 145.6 393 29.5
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.1e-32 144.8 371 31.3
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 3.6e-32 144.1 369 31.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.2e-32 143.3 355 31.0
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 8.0e-32 142.9 370 30.8
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.1e-31 142.5 370 31.1
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.4e-31 142.1 374 31.3
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.4e-31 142.1 327 32.7
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 4.0e-31 140.6 358 29.9
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.8e-31 139.8 365 31.0
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 8.9e-31 139.4 370 29.5
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 8.9e-31 139.4 370 29.5
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.0e-30 138.3 377 30.0
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.6e-30 137.9 364 30.8
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 5.8e-30 136.7 363 30.6
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 9.8e-30 136.0 360 31.1
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.3e-29 135.6 371 31.0
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.2e-29 134.8 341 28.4
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 2.2e-29 134.8 130 54.6
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 3.7e-29 134.0 370 29.2
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 3.2e-28 131.0 401 28.7
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 7.0e-28 129.8 378 30.2
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 9.2e-28 129.4 306 31.4
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.6e-27 128.6 412 28.9
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 2.0e-27 128.3 327 30.6
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.7e-27 127.9 307 31.9
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.7e-27 127.9 369 29.5
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.0e-26 125.9 360 30.3
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.3e-26 125.6 315 30.8
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.7e-26 125.2 366 29.5
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 5.0e-26 123.6 309 30.7
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.5e-25 122.1 240 33.3
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 2.8e-24 117.9 221 36.2
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 2.0e-22 111.7 265 29.1
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 9.9e-22 109.4 222 34.2
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 4.9e-21 107.1 302 28.5
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 5.4e-20 103.6 246 31.7
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 5.4e-20 103.6 228 32.5
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.2e-16 92.4 368 25.0
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.1e-15 89.4 156 38.5
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.4e-15 88.2 359 26.7
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 6.4e-13 80.1 122 36.1
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 3.0e-10 71.2 96 41.7
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.9e-09 68.6 216 24.1
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.3e-09 67.8 314 26.4


User provided reference genes

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