Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014297 Lotus japonicus HOM05D008220 ORTHO05D010358 2.9e-165 585.1 288 100.0
Lj3g0023441 Lotus japonicus HOM05D008220 ORTHO05D010358 2.9e-157 558.5 278 98.6
Lj1g0011459 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-64 250.4 267 48.3
Lj6g0011493 Lotus japonicus HOM05D008220 ORTHO05D010358 3.6e-46 189.5 155 58.7
Lj6g0021460 Lotus japonicus HOM05D008220 ORTHO05D010358 4.7e-46 189.1 155 58.7
Lj3g0019996 Lotus japonicus HOM05D008220 ORTHO05D010358 3.4e-44 183.0 259 38.6
LjContig00127g0011774 Lotus japonicus HOM05D008220 ORTHO05D010358 1.3e-43 181.0 287 36.2
LjContig00141g0011294 Lotus japonicus HOM05D008220 ORTHO05D010358 2.2e-43 180.3 282 36.5
Lj3g0027860 Lotus japonicus HOM05D008220 ORTHO05D010358 3.7e-43 179.5 261 37.2
Lj1g0018935 Lotus japonicus HOM05D008220 ORTHO05D010358 2.4e-42 176.8 258 34.1
LjContig00583g0009142 Lotus japonicus HOM05D008220 ORTHO05D010358 5.9e-41 172.2 265 35.5
Lj6g0001371 Lotus japonicus HOM05D008220 ORTHO05D010358 7.2e-39 165.2 284 35.6
Lj5g0003699 Lotus japonicus HOM05D008220 ORTHO05D010358 9.5e-39 164.9 255 36.5
Lj3g0010325 Lotus japonicus HOM05D008220 ORTHO05D010358 1.6e-38 164.1 284 35.2
Lj4g0014288 Lotus japonicus HOM05D008220 ORTHO05D010358 4.7e-38 162.5 265 34.0
LjContig00357g0008125 Lotus japonicus HOM05D008220 ORTHO05D010358 3.0e-37 159.8 259 36.3
Lj1g0026317 Lotus japonicus HOM05D008220 ORTHO05D010358 8.8e-37 158.3 264 34.1
Lj1g0024049 Lotus japonicus HOM05D008220 ORTHO05D010358 1.5e-36 157.5 257 37.4
Lj6g0001845 Lotus japonicus HOM05D008220 ORTHO05D010358 2.6e-36 156.8 260 34.2
Lj5g0002610 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-35 154.1 240 36.7
Lj2g0017871 Lotus japonicus HOM05D008220 ORTHO05D010358 2.8e-35 153.3 247 34.8
Lj6g0019563 Lotus japonicus HOM05D008220 ORTHO05D010358 7.8e-33 145.2 257 34.2
Lj5g0006780 Lotus japonicus HOM05D008220 ORTHO05D010358 1.2e-30 137.9 155 46.5
Lj4g0013144 Lotus japonicus HOM05D008220 ORTHO05D010358 6.8e-29 132.1 273 29.3
Lj5g0015440 Lotus japonicus HOM05D008220 ORTHO05D010358 8.9e-29 131.7 256 31.6
Lj1g0017334 Lotus japonicus HOM05D008220 ORTHO05D010358 2.9e-27 126.7 281 27.4
Lj2g0009989 Lotus japonicus HOM05D008220 ORTHO05D010358 1.6e-25 120.9 136 41.9
Lj4g0014244 Lotus japonicus HOM05D008220 ORTHO05D010358 2.3e-24 117.1 112 45.5
Lj5g0005201 Lotus japonicus HOM05D008220 ORTHO05D010358 3.9e-24 116.3 241 32.8
Lj1g0010052 Lotus japonicus HOM05D008220 ORTHO05D010358 8.6e-24 115.2 133 43.6
Lj1g0010280 Lotus japonicus HOM05D008220 ORTHO05D010358 1.5e-23 114.4 285 26.3
Lj1g0001129 Lotus japonicus HOM05D008220 ORTHO05D010358 4.3e-23 112.8 156 38.5
Lj1g0011765 Lotus japonicus HOM05D008220 ORTHO05D010358 4.7e-22 109.4 271 29.9
Lj5g0012072 Lotus japonicus HOM05D008220 ORTHO05D010358 8.9e-21 105.1 195 32.3
Lj3g0003280 Lotus japonicus HOM05D008220 ORTHO05D010358 1.5e-20 104.4 219 31.1
Lj3g0004063 Lotus japonicus HOM05D008220 ORTHO05D010358 4.4e-20 102.8 149 38.3
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 2.4e-18 97.1 260 27.7
Lj2g0010794 Lotus japonicus HOM05D008220 ORTHO05D010358 4.1e-18 96.3 135 34.1
Lj2g0019090 Lotus japonicus HOM05D008220 ORTHO05D010358 4.1e-18 96.3 261 26.1
LjContig00141g0005868 Lotus japonicus HOM05D008220 ORTHO05D010358 2.7e-17 93.6 197 31.5
LjContig00081g0006498 Lotus japonicus HOM05D030494 ORTHO05D010358 7.8e-17 92.0 217 30.9
Lj2g0027421 Lotus japonicus HOM05D008220 ORTHO05D010358 3.9e-16 89.7 133 39.1
Lj3g0011116 Lotus japonicus HOM05D008220 ORTHO05D010358 7.3e-15 85.5 87 46.0
Lj4g0004153 Lotus japonicus HOM05D008220 ORTHO05D010358 1.6e-14 84.3 176 31.2
Lj2g0010122 Lotus japonicus HOM05D008220 ORTHO05D010358 4.0e-13 79.7 122 31.1
Lj6g0007004 Lotus japonicus HOM05D019244 ORTHO05D010358 4.0e-13 79.7 87 44.8
Lj1g0021549 Lotus japonicus HOM05D008220 ORTHO05D010358 5.2e-13 79.3 105 41.9
Lj6g0001789 Lotus japonicus HOM05D019244 ORTHO05D010358 6.8e-13 79.0 113 38.1
Lj6g0026012 Lotus japonicus HOM05D008220 ORTHO05D010358 2.0e-12 77.4 211 23.7
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 9.8e-12 75.1 266 22.9
Lj5g0026451 Lotus japonicus HOM05D008220 ORTHO05D010358 9.8e-12 75.1 178 28.7
Lj1g0012808 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-11 74.3 80 45.0
Lj2g0013073 Lotus japonicus HOM05D008220 ORTHO05D010358 4.9e-11 72.8 131 32.1
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.9e-11 72.8 263 22.4
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.1e-10 71.6 77 33.8
Lj3g0028205 Lotus japonicus HOM05D008220 ORTHO05D010358 2.4e-10 70.5 83 39.8
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 4.1e-10 69.7 240 27.1
Lj4g0019865 Lotus japonicus HOM05D019244 ORTHO05D036501 7.1e-10 68.9 86 39.5
Lj4g0023050 Lotus japonicus HOM05D008220 ORTHO05D010358 9.2e-10 68.6 82 39.0
Lj1g0024783 Lotus japonicus HOM05D008220 ORTHO05D010358 1.2e-09 68.2 83 39.8
COL.COLO4_15431 Corchorus olitorius HOM05D008263 ORTHO05D009583 2.1e-09 67.4 279 21.9
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.1e-09 67.4 257 22.2
COL.COLO4_04627 Corchorus olitorius HOM05D008263 ORTHO05D009583 7.8e-09 65.5 308 22.4
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.0e-08 65.1 93 32.3
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.0e-08 63.5 268 19.4
Lj6g0008950 Lotus japonicus HOM05D019244 ORTHO05D036501 3.0e-08 63.5 91 36.3
LjContig00272g0003214 Lotus japonicus HOM05D019244 ORTHO05D036501 3.0e-08 63.5 91 36.3
Lj5g0003527 Lotus japonicus HOM05D019244 ORTHO05D010358 3.9e-08 63.2 93 36.6
COL.COLO4_38463 Corchorus olitorius HOM05D008263 ORTHO05D009583 5.1e-08 62.8 293 23.5
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.6e-08 62.4 87 32.2
COL.COLO4_32924 Corchorus olitorius HOM05D011882 ORTHO05D015081 6.6e-08 62.4 272 24.6
MBI04_g05748_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 6.6e-08 62.4 279 22.2
Sc12g0005710 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.6e-08 62.4 270 18.9
Ah.16g108500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.6e-08 62.0 77 32.5
COL.COLO4_00259 Corchorus olitorius HOM05D008263 ORTHO05D009583 1.1e-07 61.6 305 22.0
Phvul.005G131700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.1e-07 61.6 274 20.8
vmacro16299 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 1.1e-07 61.6 249 22.9
Actinidia23250 Actinidia chinensis HOM05D012898 ORTHO05D009356 2.5e-07 60.5 182 25.8
Ah.05g171570 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.5e-07 60.5 108 30.6
Ah.08g219500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.5e-07 60.5 93 28.0
Phvul.010G016100 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.3e-07 60.1 248 21.4
EL10Ac9g21786 Beta vulgaris HOM05D008976 ORTHO05D011121 4.3e-07 59.7 316 20.3
Phvul.001G161800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 5.6e-07 59.3 253 21.7
Phvul.008G101400 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 5.6e-07 59.3 267 19.1
Cc06_g06210 Coffea canephora HOM05D000142 ORTHO05D000124 7.3e-07 58.9 82 36.6
CSS0012554 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 9.5e-07 58.5 269 22.7
Eucgr.B03825 Eucalyptus grandis HOM05D001197 ORTHO05D000124 9.5e-07 58.5 94 31.9
MBI11_g34175_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 9.5e-07 58.5 269 22.3
Phvul.L001950 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 9.5e-07 58.5 261 21.1
PGR119G0586 Punica granatum HOM05D000142 ORTHO05D000124 9.5e-07 58.5 83 38.6
Thecc.09G223500 Theobroma cacao HOM05D009258 ORTHO05D000006 9.5e-07 58.5 208 25.0
Lj1g0009767 Lotus japonicus HOM05D030494 ORTHO05D010358 1.2e-06 58.2 103 30.1
Sc01g0000330 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.2e-06 58.2 113 31.9
MBI11_g44589_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.6e-06 57.8 269 22.7
Sc18g0000360 Simmondsia chinensis HOM05D009348 ORTHO05D030613 1.6e-06 57.8 77 36.4
Actinidia03783 Actinidia chinensis HOM05D001197 ORTHO05D000124 3.6e-06 56.6 83 38.6
CSS0002532 Camellia sinensis var. sinensis HOM05D001197 ORTHO05D000124 3.6e-06 56.6 83 37.3
SalBow7G0273 Salvia bowleyana HOM05D001197 ORTHO05D000124 3.6e-06 56.6 83 33.7
Sc18g0002450 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.6e-06 56.6 260 20.4
CSS0024781 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 4.7e-06 56.2 77 33.8
Actinidia11796 Actinidia chinensis HOM05D002604 ORTHO05D009356 8.1e-06 55.5 97 30.9
Ciclev10032498m.g Citrus clementina HOM05D000142 ORTHO05D008397 8.1e-06 55.5 75 36.0
MD03G1005800 Malus domestica HOM05D001283 ORTHO05D001109 8.1e-06 55.5 126 24.6
Nn5g29730 Nelumbo nucifera HOM05D004650 ORTHO05D005715 8.1e-06 55.5 189 21.7
Thecc.09G208600 Theobroma cacao HOM05D001283 ORTHO05D001109 8.1e-06 55.5 164 25.0


User provided reference genes

Program Settings