Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 2.5e-87 325.9 224 100.0
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 1.2e-57 227.3 148 85.8
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 3.5e-57 225.7 148 85.1
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 7.3e-55 218.0 226 62.4
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 8.1e-54 214.5 146 77.4
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 1.1e-53 214.2 140 81.4
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 1.4e-53 213.8 148 80.4
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 5.2e-53 211.8 150 79.3
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 2.0e-52 209.9 140 79.3
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 2.0e-52 209.9 140 79.3
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 3.4e-52 209.1 135 82.2
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 4.4e-52 208.8 147 78.2
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 9.9e-52 207.6 144 79.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 9.9e-52 207.6 147 76.2
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.7e-51 206.8 146 79.5
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.7e-51 206.8 139 79.1
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 2.2e-51 206.5 149 76.5
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 4.9e-51 205.3 137 79.6
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 6.4e-51 204.9 134 82.1
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.9e-50 203.4 143 76.2
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 2.4e-50 203.0 147 76.2
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 7.1e-50 201.4 226 59.3
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 2.1e-49 199.9 141 74.5
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 2.7e-49 199.5 137 76.6
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 3.5e-49 199.1 141 77.3
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 3.5e-49 199.1 151 74.8
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 3.5e-49 199.1 141 73.8
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 6.0e-49 198.4 226 61.1
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 7.8e-49 198.0 145 76.6
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.0e-48 197.6 143 74.1
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 1.7e-48 196.8 145 73.8
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 1.7e-48 196.8 228 56.6
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 3.0e-48 196.1 145 77.9
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 3.9e-48 195.7 131 80.9
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 5.1e-48 195.3 137 79.6
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 8.7e-48 194.5 140 75.7
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 1.1e-47 194.1 145 71.7
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 1.5e-47 193.7 141 76.6
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 1.5e-47 193.7 142 74.6
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 4.3e-47 192.2 144 73.6
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.3e-47 192.2 144 73.6
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 5.6e-47 191.8 135 76.3
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 7.3e-47 191.4 146 73.3
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 7.3e-47 191.4 139 74.8
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 9.6e-47 191.0 135 77.8
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.3e-46 190.7 144 72.9
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.6e-46 190.3 151 69.5
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.6e-46 190.3 137 73.7
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 2.1e-46 189.9 134 74.6
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 3.6e-46 189.1 135 73.3
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.8e-46 188.7 144 72.2
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 6.2e-46 188.3 149 71.1
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 8.1e-46 188.0 134 73.9
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 1.4e-45 187.2 151 70.2
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 1.4e-45 187.2 149 71.1
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.8e-45 186.8 135 72.6
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 5.3e-45 185.3 133 76.7
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.2e-44 184.1 135 74.1
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 2.0e-44 183.3 133 73.7
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 4.4e-44 182.2 137 70.1
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.2e-43 179.9 137 73.7
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 2.2e-43 179.9 144 68.8
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 3.8e-43 179.1 136 71.3
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 8.4e-43 177.9 150 65.3
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.1e-42 177.6 147 66.7
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 1.9e-42 176.8 147 66.0
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.9e-42 176.8 144 70.1
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 1.9e-42 176.8 131 72.5
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 2.4e-42 176.4 148 66.2
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 4.2e-42 175.6 131 75.6
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 9.3e-42 174.5 144 68.8
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 2.1e-41 173.3 154 66.9
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.1e-41 173.3 146 63.7
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 4.6e-41 172.2 126 72.2
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 6.0e-41 171.8 138 65.9
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.7e-40 170.2 147 64.6
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.7e-40 170.2 145 65.5
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 5.1e-40 168.7 130 70.8
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 6.6e-40 168.3 131 67.9
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 8.7e-40 167.9 140 61.4
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 8.7e-40 167.9 147 61.9
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 1.9e-39 166.8 147 62.6
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 2.5e-39 166.4 132 65.2
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.3e-39 166.0 135 66.7
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 3.3e-39 166.0 137 65.0
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 4.3e-39 165.6 131 67.9
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 7.4e-39 164.9 147 61.9
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 7.4e-39 164.9 147 61.9
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 7.4e-39 164.9 147 61.9
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 7.4e-39 164.9 147 61.9
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 7.4e-39 164.9 135 65.9
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 2.1e-38 163.3 147 60.5
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 2.1e-38 163.3 147 60.5
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 2.1e-38 163.3 147 60.5
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 3.6e-38 162.5 147 59.9
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 4.8e-38 162.2 147 59.9
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 4.8e-38 162.2 147 61.2
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 6.2e-38 161.8 132 66.7
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 6.2e-38 161.8 142 62.7
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 8.1e-38 161.4 131 68.7
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-37 161.0 147 59.9
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.1e-37 161.0 147 59.9
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 2.2e-35 153.3 133 61.7
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 2.2e-35 153.3 133 61.7
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.4e-34 150.6 135 65.9
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.2e-34 149.4 145 59.3
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 4.2e-34 149.1 145 59.3
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 1.6e-33 147.1 143 59.4
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 3.5e-33 146.0 131 60.3
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.9e-31 140.2 135 57.0
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.9e-31 140.2 135 59.3
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.6e-31 138.7 110 68.2
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 5.3e-29 132.1 131 55.7
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 6.9e-29 131.7 151 53.0
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 6.9e-29 131.7 151 53.0
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 1.2e-28 131.0 151 52.3
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-28 131.0 144 53.5
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-28 131.0 151 52.3
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 1.2e-28 131.0 151 52.3
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-28 131.0 135 57.0
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 1.5e-28 130.6 151 52.3
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 1.5e-28 130.6 150 53.3
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 1.5e-28 130.6 150 53.3
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 2.0e-28 130.2 150 52.7
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 3.4e-28 129.4 138 55.1
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 5.8e-28 128.6 144 52.8
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 4.2e-26 122.5 98 66.3
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 5.5e-26 122.1 139 51.8
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 4.6e-25 119.0 115 60.9
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 1.0e-24 117.9 135 52.6
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.3e-24 117.5 144 50.0
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 1.8e-24 117.1 141 53.2
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 6.7e-24 115.2 166 51.8
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.8e-21 107.1 102 64.7
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-21 106.7 138 51.4
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 2.4e-21 106.7 138 51.4
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.2e-14 83.6 68 67.6
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 5.0e-11 72.4 141 36.9
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 1.7e-06 57.4 60 55.0
FvH4_7g19390 Fragaria vesca HOM05D036880 ORTHO05D006491 2.8e-06 56.6 58 55.2


User provided reference genes

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