Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 2.8e-91 339.3 284 100.0
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 4.6e-54 215.7 284 79.9
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 8.4e-48 194.9 284 69.0
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 3.5e-46 189.5 285 76.8
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.0e-45 188.0 281 71.2
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 8.7e-45 184.9 285 72.6
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 1.9e-44 183.7 284 73.9
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.5e-44 183.3 285 70.9
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 9.6e-44 181.4 286 76.6
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.7e-43 179.5 285 68.4
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 4.0e-42 176.0 281 60.1
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.7e-40 170.6 285 73.7
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.7e-40 170.6 241 81.3
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 8.4e-40 168.3 280 66.1
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.4e-39 167.5 285 69.5
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 1.2e-38 164.5 284 73.2
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 1.8e-37 160.6 285 71.6
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 3.0e-37 159.8 284 71.8
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.9e-36 157.1 283 69.3
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 3.3e-36 156.4 281 68.3
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.3e-36 156.4 306 63.1
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 1.1e-34 151.4 234 79.5
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 3.1e-34 149.8 284 70.1
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 5.3e-34 149.1 285 70.9
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.2e-33 147.9 281 57.3
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 2.6e-33 146.7 310 57.4
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 3.4e-33 146.4 284 71.1
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 5.9e-33 145.6 286 68.9
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 5.9e-33 145.6 285 67.4
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.3e-32 144.4 286 68.2
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 2.9e-32 143.3 306 63.4
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 5.5e-31 139.0 284 60.9
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.6e-30 137.5 284 61.3
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 4.6e-30 136.0 281 61.6
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.8e-29 134.0 278 52.2
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 3.0e-29 133.3 286 61.5
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.1e-28 131.3 195 56.9
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.5e-28 130.2 197 53.8
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.3e-27 127.9 277 62.1
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 3.7e-27 126.3 235 71.1
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.1e-26 124.8 285 51.2
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.8e-26 124.0 236 72.0
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 2.4e-26 123.6 237 71.3
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 6.9e-26 122.1 280 55.0
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 6.9e-26 122.1 284 59.5
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 9.0e-26 121.7 287 67.9
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 2.0e-25 120.6 285 58.6
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.6e-25 120.2 277 58.5
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.4e-25 119.8 257 63.4
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.7e-24 117.5 236 71.2
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 2.9e-24 116.7 281 61.2
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.5e-23 113.6 281 61.9
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 3.2e-23 113.2 174 70.7
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 9.4e-23 111.7 243 58.4
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 1.6e-22 110.9 235 63.8
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 3.6e-22 109.8 283 60.1
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 4.6e-22 109.4 237 61.6
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.1e-22 109.0 285 53.3
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 6.1e-22 109.0 192 51.0
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.4e-21 107.8 161 79.5
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.0e-21 106.7 280 57.5
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.9e-21 106.3 235 62.1
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 6.7e-21 105.5 307 62.2
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 1.1e-20 104.8 292 51.4
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.1e-20 104.8 287 47.7
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 2.6e-20 103.6 206 70.9
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 7.4e-20 102.1 277 57.4
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 7.4e-20 102.1 197 56.3
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 7.4e-20 102.1 197 46.7
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 9.7e-20 101.7 292 55.1
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 2.8e-19 100.1 317 54.6
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 3.7e-19 99.8 204 64.2
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 4.8e-19 99.4 241 64.3
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 8.2e-19 98.6 160 88.1
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 8.2e-19 98.6 311 56.3
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.1e-18 98.2 160 85.6
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 1.4e-18 97.8 207 74.9
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.4e-18 97.8 206 58.7
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.4e-18 97.1 278 44.6
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 3.1e-18 96.7 161 75.2
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.2e-17 94.7 197 55.3
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 2.0e-17 94.0 204 58.8
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 2.0e-17 94.0 160 83.1
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 4.5e-17 92.8 160 73.8
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 7.7e-17 92.0 292 55.5
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 1.3e-16 91.3 284 57.7
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 2.2e-16 90.5 238 69.3
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 2.2e-16 90.5 161 67.7
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 6.5e-16 89.0 236 64.0
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 8.5e-16 88.6 209 73.7
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 8.5e-16 88.6 194 77.3
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 2.5e-15 87.0 133 84.2
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.2e-14 84.7 235 63.8
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 1.6e-14 84.3 169 69.2
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.6e-14 84.3 197 44.7
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 2.1e-14 84.0 309 58.9
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 2.7e-14 83.6 192 65.1
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 2.7e-14 83.6 161 72.0
MD08G1229300 Malus domestica HOM05D003347 ORTHO05D003821 2.7e-14 83.6 157 47.1
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 4.7e-14 82.8 154 55.2
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 4.7e-14 82.8 77 63.6
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 7.9e-14 82.0 310 46.5
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.0e-13 81.6 285 59.3
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.3e-13 80.5 190 63.2
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 3.0e-13 80.1 202 48.5
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.9e-13 79.7 158 63.3
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 5.2e-13 79.3 193 60.1
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 5.2e-13 79.3 218 63.8
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.5e-12 77.8 182 38.5
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.0e-12 77.4 133 77.4
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.4e-12 76.3 185 68.1
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 5.7e-12 75.9 199 51.3
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 7.4e-12 75.5 196 50.5
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 7.4e-12 75.5 292 56.2
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 9.7e-12 75.1 147 53.7
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.3e-11 74.7 195 41.5
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.3e-11 74.7 113 55.8
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 1.7e-11 74.3 204 51.0
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 2.2e-11 73.9 140 50.7
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 3.7e-11 73.2 77 57.1
AT1G10890 Arabidopsis thaliana HOM05D003347 ORTHO05D003821 4.8e-11 72.8 243 60.1
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 6.3e-11 72.4 156 66.7
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 2.4e-10 70.5 275 52.4
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 3.1e-10 70.1 134 64.9
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.1e-10 70.1 77 68.8
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 4.1e-10 69.7 160 56.2
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 4.1e-10 69.7 72 56.9
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 7.0e-10 68.9 191 50.3
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 9.1e-10 68.6 198 44.9
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.2e-09 68.2 75 72.0
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.6e-09 67.8 160 70.6
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 3.5e-09 66.6 196 45.4
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 4.5e-09 66.2 372 46.0
AT5G13340 Arabidopsis thaliana HOM05D012923 ORTHO05D014747 5.9e-09 65.9 174 43.7
Ciclev10002126m.g Citrus clementina HOM05D003347 ORTHO05D003821 5.9e-09 65.9 285 53.0
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 7.7e-09 65.5 197 41.1
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 7.7e-09 65.5 309 56.3
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 1.0e-08 65.1 72 54.2
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 1.0e-08 65.1 72 58.3
AL6G23960 Arabidopsis lyrata HOM05D012923 ORTHO05D014747 1.3e-08 64.7 174 44.3
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.3e-08 64.7 74 55.4
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.3e-08 64.7 49 71.4
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 1.3e-08 64.7 72 66.7
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 1.7e-08 64.3 194 53.1
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 2.9e-08 63.5 148 56.1
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 3.8e-08 63.2 379 38.8
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 6.5e-08 62.4 280 53.2
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 8.5e-08 62.0 186 59.7
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 8.5e-08 62.0 160 65.6
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 1.1e-07 61.6 281 44.5
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 1.5e-07 61.2 74 54.1
Sabra01G0163000 Salix brachista HOM05D003347 ORTHO05D003821 1.5e-07 61.2 161 75.8
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.5e-07 60.5 281 47.3
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 2.5e-07 60.5 49 65.3
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 5.5e-07 59.3 259 52.1
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 9.4e-07 58.5 102 54.9
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.6e-06 57.8 182 38.5
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 2.1e-06 57.4 84 51.2
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.1e-06 57.4 65 55.4
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 2.7e-06 57.0 111 47.7
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.6e-06 56.6 281 46.6
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 6.1e-06 55.8 175 46.3
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 8.0e-06 55.5 283 46.3


User provided reference genes

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