Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 2.4e-281 971.5 485 100.0
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 4.3e-161 572.0 462 68.0
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 4.3e-161 572.0 468 66.2
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 4.2e-156 555.4 472 65.7
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 4.2e-156 555.4 470 64.0
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 3.0e-154 549.3 472 65.3
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 6.7e-122 441.8 481 53.0
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 6.3e-120 435.3 482 52.5
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.9e-116 423.7 476 51.3
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.7e-112 410.6 478 51.3
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 2.8e-112 409.8 509 50.7
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.4e-111 407.5 449 53.2
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.8e-111 407.1 468 52.8
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 9.1e-111 404.8 467 51.8
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.6e-110 404.1 449 50.8
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 2.3e-109 400.2 487 50.1
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.9e-109 399.8 477 50.5
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.8e-109 399.4 444 53.2
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.1e-108 397.9 473 49.7
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.5e-108 397.5 473 49.5
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 4.2e-108 396.0 464 50.9
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.6e-107 394.0 486 50.4
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.6e-107 392.9 489 47.4
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 4.7e-107 392.5 463 50.1
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 6.1e-107 392.1 480 46.7
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.4e-106 391.0 483 49.9
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.4e-106 391.0 483 49.9
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.8e-106 390.6 463 49.9
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 5.2e-106 389.0 479 49.1
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 2.2e-104 383.6 441 51.0
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 2.8e-104 383.3 467 50.7
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.7e-104 382.9 464 49.6
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 6.3e-104 382.1 478 48.7
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-103 381.3 481 48.0
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.4e-103 380.9 481 47.6
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 3.5e-102 376.3 493 48.7
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 3.5e-102 376.3 476 47.3
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 6.6e-101 372.1 460 47.0
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 8.6e-101 371.7 469 50.3
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.1e-100 371.3 448 50.9
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 7.3e-100 368.6 462 47.6
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 9.5e-100 368.2 438 50.7
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 3.6e-99 366.3 455 48.1
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.8e-98 364.0 484 47.7
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 2.3e-98 363.6 431 50.1
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 2.3e-98 363.6 436 49.5
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 6.8e-98 362.1 465 47.7
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 3.7e-96 356.3 426 51.2
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 6.0e-94 349.0 440 45.0
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 3.6e-91 339.7 472 44.3
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 8.0e-91 338.6 436 48.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 1.4e-90 337.8 516 43.4
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.6e-86 322.8 400 48.0
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 3.0e-85 320.1 454 44.7
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 8.1e-83 312.0 390 48.2
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 2.1e-75 287.3 423 45.2
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 4.0e-74 283.1 431 39.7
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 4.4e-73 279.6 431 39.0
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.9e-72 276.9 442 38.9
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 5.8e-65 252.7 429 37.1
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.2e-63 246.9 440 36.8
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 7.1e-63 245.7 440 37.0
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 9.3e-63 245.4 442 36.0
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 6.6e-61 239.2 429 36.4
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 9.6e-60 235.3 344 47.1
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.1e-59 234.2 431 35.5
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.8e-59 233.8 447 36.2
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.6e-59 233.4 440 36.4
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.1e-58 231.9 438 35.4
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 6.9e-58 229.2 429 33.8
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 6.9e-58 229.2 429 33.8
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.2e-57 228.4 469 34.8
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 3.4e-57 226.9 429 33.6
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 3.4e-57 226.9 429 33.6
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.6e-57 225.7 429 34.0
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.2e-56 224.2 483 33.1
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.9e-56 223.0 425 33.9
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.9e-55 221.1 461 37.1
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 7.1e-55 219.2 316 43.4
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 9.3e-55 218.8 217 53.9
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-54 218.0 429 32.6
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.8e-53 214.5 446 35.9
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 8.7e-53 212.2 431 32.0
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 8.7e-53 212.2 373 39.4
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.9e-52 211.1 430 33.3
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 9.6e-52 208.8 429 33.1
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.6e-51 208.0 429 34.5
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 2.8e-51 207.2 424 35.4
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 8.1e-51 205.7 425 31.1
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 6.9e-50 202.6 420 36.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 4.9e-48 196.4 396 35.4
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 4.9e-48 196.4 453 30.9
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 8.4e-48 195.7 366 37.4
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 9.3e-47 192.2 356 36.5
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 2.7e-46 190.7 417 34.8
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 7.9e-46 189.1 460 31.1
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.3e-45 187.6 342 35.7
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.9e-44 184.5 346 35.0
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.9e-44 184.5 366 36.9
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.1e-42 178.7 390 32.8
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 9.0e-42 175.6 425 32.9
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 5.8e-41 172.9 146 59.6
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.9e-40 170.6 363 33.6
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.9e-40 170.6 352 34.4
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.7e-38 164.1 319 35.1
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 3.5e-38 163.7 371 32.6
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 4.6e-38 163.3 426 27.7
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.8e-37 161.4 228 45.6
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.8e-37 161.4 422 30.8
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.0e-37 160.6 199 42.7
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 3.0e-37 160.6 369 30.9
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.1e-36 158.7 376 31.4
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 2.5e-36 157.5 162 49.4
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 5.3e-34 149.8 384 33.6
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 5.3e-34 149.8 372 30.6
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.2e-33 148.7 112 63.4
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 3.4e-33 147.1 161 42.9
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.5e-33 146.7 369 29.0
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 4.5e-33 146.7 276 41.3
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.6e-30 136.7 358 29.9
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.1e-30 136.3 382 30.1
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 2.3e-29 134.4 346 32.4
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 3.9e-29 133.7 284 31.3
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.7e-29 132.9 358 29.3
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 3.7e-27 127.1 299 34.1
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 3.7e-27 127.1 299 34.1
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-26 125.2 161 39.8
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 9.1e-26 122.5 163 45.4
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.0e-24 119.0 357 29.1
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 8.5e-24 115.9 136 48.5
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 8.5e-24 115.9 136 48.5
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 9.4e-23 112.5 286 28.7
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 1.6e-22 111.7 150 46.0
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 7.9e-22 109.4 354 30.2
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 7.9e-22 109.4 139 37.4
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.4e-21 108.6 103 52.4
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.8e-21 108.2 149 43.6
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.8e-21 108.2 121 43.0
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 3.5e-17 94.0 108 48.1
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.8e-16 90.5 163 35.0
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 1.4e-15 88.6 70 58.6
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.7e-12 76.6 127 40.9
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-10 72.0 100 36.0
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 5.3e-10 70.1 120 36.7
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.3e-08 65.5 63 52.4
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 2.5e-07 61.2 80 41.2


User provided reference genes

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