Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 5.2e-57 224.2 114 100.0
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 4.9e-47 191.0 114 84.2
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 4.9e-47 191.0 114 84.2
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 2.0e-45 185.7 117 84.6
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 4.6e-45 184.5 113 84.1
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 6.0e-45 184.1 117 83.8
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 4.7e-42 174.5 112 78.6
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 4.0e-41 171.4 116 79.3
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 2.6e-40 168.7 120 77.5
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 7.5e-40 167.2 119 77.3
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 1.3e-39 166.4 117 80.3
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.9e-39 165.2 122 75.4
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 4.9e-39 164.5 115 76.5
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 8.3e-39 163.7 113 76.1
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.9e-38 162.5 123 68.3
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 2.4e-38 162.2 122 75.4
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 2.4e-38 162.2 113 75.2
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 5.4e-38 161.0 123 67.5
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 3.5e-37 158.3 122 71.3
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 4.6e-37 157.9 120 73.3
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 7.8e-37 157.1 116 72.4
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 1.3e-36 156.4 118 75.4
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 1.3e-36 156.4 120 70.8
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 1.3e-36 156.4 115 74.8
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 1.7e-36 156.0 122 73.8
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 2.3e-36 155.6 119 70.6
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 2.3e-36 155.6 119 74.8
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 3.0e-36 155.2 121 69.4
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 3.0e-36 155.2 117 72.6
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 3.9e-36 154.8 120 70.8
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 8.6e-36 153.7 121 70.2
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 2.5e-35 152.1 121 70.2
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 3.3e-35 151.8 115 63.5
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 7.3e-35 150.6 126 66.7
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 1.2e-34 149.8 126 65.1
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 2.8e-34 148.7 115 72.2
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 3.6e-34 148.3 112 68.8
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 3.6e-34 148.3 119 68.1
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.6e-34 148.3 114 70.2
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.6e-34 148.3 114 70.2
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 3.6e-34 148.3 117 70.9
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 8.1e-34 147.1 121 67.8
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 8.1e-34 147.1 112 62.5
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 1.4e-33 146.4 123 69.9
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 1.4e-33 146.4 112 67.0
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 1.4e-33 146.4 123 69.1
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.8e-33 146.0 112 67.9
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 3.1e-33 145.2 123 68.3
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 3.1e-33 145.2 124 61.3
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 3.1e-33 145.2 117 69.2
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.1e-33 145.2 117 69.2
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 3.1e-33 145.2 120 71.7
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 4.0e-33 144.8 107 75.7
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 4.0e-33 144.8 118 64.4
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 5.2e-33 144.4 122 70.5
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 5.2e-33 144.4 118 61.9
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 8.9e-33 143.7 100 72.0
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 8.9e-33 143.7 108 75.0
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 1.2e-32 143.3 119 68.1
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 1.5e-32 142.9 126 66.7
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 1.5e-32 142.9 125 66.4
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 2.0e-32 142.5 126 66.7
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.4e-32 141.7 117 67.5
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 3.4e-32 141.7 116 69.0
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 3.4e-32 141.7 116 69.0
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 4.4e-32 141.4 124 65.3
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 2.2e-31 139.0 120 65.8
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 2.2e-31 139.0 120 66.7
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 2.2e-31 139.0 120 68.3
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 2.9e-31 138.7 124 63.7
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 3.8e-31 138.3 122 64.8
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 6.4e-31 137.5 119 63.0
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 6.4e-31 137.5 125 64.0
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 6.4e-31 137.5 119 62.2
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 8.4e-31 137.1 120 64.2
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 8.4e-31 137.1 123 65.0
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 8.4e-31 137.1 121 63.6
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.1e-30 136.7 105 70.5
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.9e-30 136.0 122 64.8
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.9e-30 136.0 126 61.1
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 3.2e-30 135.2 118 60.2
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 5.4e-30 134.4 122 63.9
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 5.4e-30 134.4 109 69.7
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 5.4e-30 134.4 115 62.6
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 7.1e-30 134.0 108 67.6
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 7.1e-30 134.0 119 61.3
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 7.1e-30 134.0 119 61.3
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 9.2e-30 133.7 131 58.0
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 9.2e-30 133.7 119 61.3
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 1.2e-29 133.3 120 64.2
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 1.6e-29 132.9 130 60.8
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 2.1e-29 132.5 109 67.9
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 3.5e-29 131.7 125 60.8
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 4.6e-29 131.3 110 70.0
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 7.8e-29 130.6 120 64.2
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 7.8e-29 130.6 108 71.3
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 1.0e-28 130.2 110 70.9
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 1.3e-28 129.8 117 61.5
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 3.0e-28 128.6 112 67.9
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 3.9e-28 128.3 124 58.9
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 5.1e-28 127.9 124 58.9
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 6.6e-28 127.5 119 58.0
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 8.6e-28 127.1 112 67.9
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 1.1e-27 126.7 109 67.0
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 1.1e-27 126.7 109 67.0
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 1.1e-27 126.7 123 61.0
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.5e-27 126.3 111 66.7
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 3.3e-27 125.2 118 56.8
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.3e-27 125.2 119 55.5
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 4.3e-27 124.8 119 57.1
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 4.3e-27 124.8 120 64.2
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 5.6e-27 124.4 120 63.3
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 7.3e-27 124.0 112 67.0
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 7.3e-27 124.0 119 55.5
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 9.6e-27 123.6 119 56.3
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 9.6e-27 123.6 119 56.3
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 9.6e-27 123.6 126 57.9
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.2e-26 123.2 116 54.3
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 1.2e-26 123.2 106 64.2
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.6e-26 122.9 121 62.8
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 1.6e-26 122.9 104 62.5
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 1.6e-26 122.9 105 64.8
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.1e-26 122.5 119 54.6
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 2.8e-26 122.1 114 59.6
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 4.7e-26 121.3 115 59.1
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 4.7e-26 121.3 115 55.7
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 8.1e-26 120.6 115 58.3
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 1.1e-25 120.2 113 56.6
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 1.1e-25 120.2 106 66.0
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 1.4e-25 119.8 115 58.3
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 1.4e-25 119.8 115 58.3
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.4e-25 119.8 118 53.4
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 1.8e-25 119.4 137 54.0
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 2.4e-25 119.0 109 67.9
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 2.4e-25 119.0 116 56.0
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 3.1e-25 118.6 112 60.7
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 4.0e-25 118.2 114 57.9
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 4.0e-25 118.2 115 57.4
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 4.0e-25 118.2 115 57.4
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 4.0e-25 118.2 117 53.8
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 6.9e-25 117.5 117 55.6
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 6.9e-25 117.5 116 56.0
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 6.9e-25 117.5 110 65.5
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.2e-24 116.7 112 58.0
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 1.5e-24 116.3 122 57.4
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 2.0e-24 115.9 118 59.3
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 2.0e-24 115.9 118 59.3
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 2.0e-24 115.9 118 59.3
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 2.6e-24 115.5 116 55.2
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 2.6e-24 115.5 116 55.2
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 2.6e-24 115.5 116 55.2
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 2.6e-24 115.5 116 55.2
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.4e-24 115.2 117 58.1
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.4e-24 115.2 117 58.1
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 3.4e-24 115.2 111 62.2
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 4.4e-24 114.8 120 55.0
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 4.4e-24 114.8 112 57.1
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 5.8e-24 114.4 121 57.0
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 7.6e-24 114.0 118 57.6
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.1e-22 110.2 114 53.5
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 1.1e-22 110.2 99 55.6
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 1.9e-22 109.4 99 57.6
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 4.2e-22 108.2 116 53.4
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 1.6e-21 106.3 121 52.9
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 4.6e-21 104.8 113 55.8
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 1.3e-20 103.2 107 53.3
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 3.9e-20 101.7 101 54.5
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 5.6e-19 97.8 92 53.3
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 3.6e-18 95.1 103 52.4
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 2.4e-17 92.4 148 35.8
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 6.9e-17 90.9 67 62.7
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 1.3e-15 86.7 150 36.0
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 2.9e-15 85.5 157 36.3
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 8.4e-15 84.0 84 54.8
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 1.1e-14 83.6 117 43.6
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 3.2e-14 82.0 141 34.8
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.0e-12 77.0 111 46.8
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.3e-12 75.9 84 47.6
COL.COLO4_29750 Corchorus olitorius HOM05D003630 ORTHO05D004151 4.8e-10 68.2 42 78.6
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.4e-09 65.9 205 26.3
Pp3c10_24000 Physcomitrium patens HOM05D003630 ORTHO05D004151 6.9e-09 64.3 155 29.7
Eucgr.E03257 Eucalyptus grandis HOM05D003630 ORTHO05D004151 2.0e-08 62.8 43 72.1
Pp3c20_21690 Physcomitrium patens HOM05D003630 ORTHO05D004151 7.6e-08 60.8 155 29.7
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.3e-07 60.1 152 27.6
Eucgr.D00606 Eucalyptus grandis HOM05D003630 ORTHO05D004151 2.2e-07 59.3 30 90.0
Actinidia26134 Actinidia chinensis HOM05D003630 ORTHO05D004151 3.8e-07 58.5 38 71.1


User provided reference genes

Program Settings