Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 5.5e-245 850.5 420 100.0
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 5.3e-216 754.2 420 87.1
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 2.3e-211 738.8 420 86.0
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 6.3e-209 730.7 420 84.8
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 5.3e-208 727.6 420 84.5
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 7.5e-202 707.2 420 81.0
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 2.4e-200 702.2 419 82.1
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.5e-199 698.4 420 80.5
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.2e-198 695.7 425 78.8
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.1e-196 689.1 420 80.2
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 6.1e-196 687.6 421 79.1
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 8.0e-196 687.2 420 79.3
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 6.8e-195 684.1 421 79.6
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.1e-192 675.2 421 77.4
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.2e-191 673.3 420 76.9
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.6e-191 672.9 420 78.1
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 5.9e-191 671.0 420 76.9
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.0e-190 670.2 420 77.9
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 4.0e-187 658.3 420 75.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.5e-186 656.4 420 74.5
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 3.4e-186 655.2 420 75.2
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.3e-185 653.3 420 74.8
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 1.3e-185 653.3 420 74.5
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 6.3e-185 651.0 420 74.0
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 1.8e-184 649.4 420 74.3
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.8e-184 649.4 420 73.6
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.1e-184 648.7 420 73.6
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.1e-184 648.3 420 73.6
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 5.4e-184 647.9 420 73.6
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 9.2e-184 647.1 420 74.0
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.6e-183 646.4 420 74.3
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 3.5e-183 645.2 419 74.2
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 4.5e-183 644.8 420 73.8
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.0e-182 643.7 420 74.0
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.8e-182 641.7 420 73.8
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 8.6e-182 640.6 420 72.4
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.1e-181 640.2 420 72.9
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 7.3e-181 637.5 420 72.1
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.2e-180 636.7 420 71.2
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 2.8e-180 635.6 420 71.7
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 6.1e-180 634.4 420 73.6
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 3.0e-179 632.1 420 72.6
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 6.8e-179 630.9 420 73.3
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 8.9e-179 630.6 420 73.3
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 8.9e-179 630.6 420 71.7
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 8.9e-179 630.6 420 72.4
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.5e-178 629.8 405 74.8
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.0e-178 629.4 421 71.5
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 3.4e-178 628.6 420 71.9
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.3e-177 626.7 420 71.7
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.9e-177 625.5 420 71.9
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 3.7e-177 625.2 420 71.9
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 6.4e-177 624.4 421 71.7
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 7.0e-176 620.9 420 71.9
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 6.6e-174 614.4 420 70.7
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 8.6e-174 614.0 420 69.8
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.6e-174 614.0 420 69.8
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.5e-173 612.5 420 69.5
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 1.2e-172 610.1 420 69.5
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.6e-172 608.6 420 69.3
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.0e-171 607.1 420 69.0
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.8e-171 606.3 420 68.6
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.3e-171 605.9 420 68.6
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.2e-170 603.6 420 69.3
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.5e-170 603.2 420 71.2
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.5e-170 603.2 420 69.3
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.5e-170 603.2 420 67.9
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.7e-169 599.7 420 69.3
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 2.2e-169 599.4 420 70.0
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 3.7e-169 598.6 420 68.8
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.4e-168 596.7 420 69.3
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.4e-168 596.7 420 68.1
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 2.4e-168 595.9 410 68.5
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 4.1e-168 595.1 421 68.4
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 6.0e-167 591.3 420 67.4
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 3.9e-166 588.6 407 69.8
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 2.1e-164 582.8 420 68.6
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 3.6e-164 582.0 420 67.6
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 3.6e-164 582.0 421 66.7
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 6.2e-164 581.3 425 67.1
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 8.1e-164 580.9 423 67.6
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 6.8e-163 577.8 420 66.9
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 8.9e-163 577.4 425 66.6
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 2.0e-162 576.2 425 66.6
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.4e-162 575.5 414 67.6
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 4.4e-162 575.1 420 66.4
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.7e-161 573.2 420 65.2
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.9e-161 572.4 421 66.7
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.1e-160 570.5 420 66.0
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.4e-160 570.1 423 67.4
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 9.2e-160 567.4 420 64.3
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.2e-159 567.0 420 66.2
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.7e-159 565.8 421 66.5
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 3.0e-158 562.4 420 65.2
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.1e-157 560.5 420 64.8
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 1.5e-157 560.1 420 64.0
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.9e-157 559.7 420 64.8
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 1.9e-157 559.7 420 64.8
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 5.6e-157 558.1 420 64.5
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 2.1e-156 556.2 420 64.0
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 3.6e-156 555.4 424 64.9
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 5.8e-154 548.1 422 62.3
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 6.0e-151 538.1 420 62.4
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 3.0e-150 535.8 420 61.2
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 3.0e-150 535.8 420 64.0
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 6.2e-148 528.1 421 63.4
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.8e-147 526.6 420 62.9
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 4.0e-147 525.4 421 62.9
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 4.9e-145 518.5 377 66.0
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 4.2e-144 515.4 420 57.9
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 2.7e-143 512.7 420 58.8
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 2.1e-140 503.1 425 59.1
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 5.6e-133 478.4 421 56.1
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 7.1e-128 461.5 356 65.7
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 3.1e-123 446.0 405 54.3
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 2.6e-122 443.0 425 53.4
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 2.3e-118 429.9 425 52.7
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.9e-112 410.2 282 68.8
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 2.5e-112 409.8 250 78.8
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 4.2e-112 409.1 403 49.6
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 4.5e-106 389.0 325 58.8
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 6.5e-105 385.2 422 47.9
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 2.2e-92 343.6 374 47.6
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.7e-89 334.0 424 43.4
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 3.6e-87 326.2 302 57.0
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 7.0e-83 312.0 305 52.1
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.2e-81 307.0 253 58.9
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.5e-74 282.7 266 58.3
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.2e-71 274.6 317 43.5
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 8.6e-57 225.3 134 75.4
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 3.4e-45 186.8 131 69.5
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.2e-44 184.1 99 86.9
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 8.3e-44 182.2 155 59.4
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 7.3e-40 169.1 91 86.8
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 9.6e-32 142.1 74 87.8
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-31 141.7 70 91.4
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.0e-30 136.7 70 90.0
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 5.8e-29 132.9 70 88.6
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.8e-29 132.9 70 88.6
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.2e-21 108.6 79 62.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 5.8e-21 106.3 102 53.9
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 9.0e-14 82.4 426 25.1
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.8e-09 68.2 288 25.7
MBI05_g08793_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 6.7e-09 66.2 288 25.7
TAR627G0813 Trochodendron aralioides HOM05D000421 ORTHO05D001182 2.1e-07 61.2 242 24.4
PGR102G1638 Punica granatum HOM05D003488 ORTHO05D004214 4.8e-07 60.1 286 25.2
Migut.E00952 Erythranthe guttata HOM05D005930 ORTHO05D003423 3.1e-06 57.4 129 28.7
Migut.E01649 Erythranthe guttata HOM05D005930 ORTHO05D003423 4.0e-06 57.0 85 30.6
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 4.0e-06 57.0 258 27.1
Migut.L00997 Erythranthe guttata HOM05D005930 ORTHO05D003423 5.3e-06 56.6 240 23.3
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 9.0e-06 55.8 306 22.2
Lj1P237T11 Lonicera japonica HOM05D003488 ORTHO05D004214 9.0e-06 55.8 320 22.2


User provided reference genes

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