Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0010455 Lotus japonicus HOM05D000181 ORTHO05D236358 1.2e-94 349.7 171 100.0
SMO351G0531 Selaginella moellendorffii HOM05D000181 ORTHO05D005757 4.3e-07 58.9 110 36.4
CAN.G483.1 Capsicum annuum HOM05D000181 ORTHO05D005757 5.7e-07 58.5 111 36.0
Lalb_Chr04g0252331 Lupinus albus HOM05D000181 ORTHO05D005757 5.7e-07 58.5 106 37.7
Mapoly0001s0318 Marchantia polymorpha HOM05D000181 ORTHO05D005757 5.7e-07 58.5 111 36.9
Solyc06g005950.3 Solanum lycopersicum HOM05D000181 ORTHO05D005757 5.7e-07 58.5 111 36.0
Sopen06g001920 Solanum pennellii HOM05D000181 ORTHO05D005757 5.7e-07 58.5 111 36.0
Cc01_g13940 Coffea canephora HOM05D000181 ORTHO05D005757 7.4e-07 58.2 110 36.4
Nitab4.5_0000102g0170 Nicotiana tabacum HOM05D000181 ORTHO05D005757 7.4e-07 58.2 110 36.4
Nitab4.5_0001970g0080 Nicotiana tabacum HOM05D000181 ORTHO05D005757 7.4e-07 58.2 110 36.4
Potri.001G249100 Populus trichocarpa HOM05D000181 ORTHO05D005757 9.7e-07 57.8 110 37.3
THA.LOC104814906 Tarenaya hassleriana HOM05D000181 ORTHO05D005757 9.7e-07 57.8 110 36.4
TWI31G1099 Tripterygium wilfordii HOM05D000181 ORTHO05D005757 9.7e-07 57.8 110 36.4
Actinidia25147 Actinidia chinensis HOM05D000181 ORTHO05D005757 1.3e-06 57.4 111 36.0
ATR0618G289 Amborella trichopoda HOM05D000181 ORTHO05D005757 1.3e-06 57.4 110 37.3
AT5G58870 Arabidopsis thaliana HOM05D000181 ORTHO05D005757 1.3e-06 57.4 111 37.8
Cpa.g.sc112.54 Carica papaya HOM05D000181 ORTHO05D005757 1.3e-06 57.4 110 36.4
COL.COLO4_19109 Corchorus olitorius HOM05D000181 ORTHO05D005757 1.3e-06 57.4 110 36.4
Gohir.A03G049400 Gossypium hirsutum HOM05D000181 ORTHO05D005757 1.3e-06 57.4 110 36.4
Gohir.D03G117900 Gossypium hirsutum HOM05D000181 ORTHO05D005757 1.3e-06 57.4 110 36.4
Gorai.003G124400 Gossypium raimondii HOM05D000181 ORTHO05D005757 1.3e-06 57.4 110 36.4
Peaxi162Scf00216g00037 Petunia axillaris HOM05D000181 ORTHO05D005757 1.3e-06 57.4 111 36.0
Actinidia38828 Actinidia chinensis HOM05D000181 ORTHO05D005757 1.6e-06 57.0 111 36.0
AL8G35200 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 1.6e-06 57.0 111 37.8
CANSAT54G2135 Cannabis sativa HOM05D000181 ORTHO05D005757 1.6e-06 57.0 114 35.1
Carub.0008s1951 Capsella rubella HOM05D000181 ORTHO05D005757 1.6e-06 57.0 111 37.8
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 1.6e-06 57.0 110 36.4
LjContig00155g0009316 Lotus japonicus HOM05D000181 ORTHO05D005757 1.6e-06 57.0 111 34.2
THA.LOC104810725 Tarenaya hassleriana HOM05D000181 ORTHO05D005757 1.6e-06 57.0 110 36.4
CARHR272800 Cardamine hirsuta HOM05D000181 ORTHO05D005757 2.2e-06 56.6 111 37.8
Dinv14464 Davidia involucrata HOM05D000181 ORTHO05D005757 2.2e-06 56.6 111 37.8
Medtr5g069780 Medicago truncatula HOM05D000181 ORTHO05D005757 2.2e-06 56.6 111 34.2
Nn2g11391 Nelumbo nucifera HOM05D000181 ORTHO05D005757 2.2e-06 56.6 110 35.5
Psat5g162280 Pisum sativum HOM05D000181 ORTHO05D005757 2.2e-06 56.6 106 36.8
Sabra16G0151200 Salix brachista HOM05D000181 ORTHO05D005757 2.2e-06 56.6 110 37.3
VMungo0647G2397 Vigna mungo HOM05D000181 ORTHO05D005757 2.2e-06 56.6 110 35.5
A10p15460 Brassica napus HOM05D000181 ORTHO05D005757 2.8e-06 56.2 110 34.5
C09p51030 Brassica napus HOM05D000181 ORTHO05D005757 2.8e-06 56.2 110 34.5
BolC9t57960H Brassica oleracea HOM05D000181 ORTHO05D005757 2.8e-06 56.2 110 34.5
BraA10t43689Z Brassica rapa HOM05D000181 ORTHO05D005757 2.8e-06 56.2 110 34.5
CiPaw.14G061100 Carya illinoinensis HOM05D000181 ORTHO05D005757 2.8e-06 56.2 110 35.5
Gohir.D07G021500 Gossypium hirsutum HOM05D000181 ORTHO05D004115 2.8e-06 56.2 111 35.1
Gorai.001G022200 Gossypium raimondii HOM05D000181 ORTHO05D004115 2.8e-06 56.2 111 35.1
Lj2A1078G39 Lonicera japonica HOM05D000181 ORTHO05D005757 2.8e-06 56.2 114 36.8
Sabra09G0030500 Salix brachista HOM05D000181 ORTHO05D005757 2.8e-06 56.2 111 36.0
Sp6g20570 Schrenkiella parvula HOM05D000181 ORTHO05D005757 2.8e-06 56.2 110 34.5
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 2.8e-06 56.2 110 35.5
Atru.chr3.4273 Acer truncatum HOM05D000181 ORTHO05D005757 3.7e-06 55.8 110 35.5
AagrBONN_evm.TU.Sc2ySwM_228.748 Anthoceros agrestis HOM05D000181 ORTHO05D005757 3.7e-06 55.8 106 36.8
CDE04G0235 Ceratophyllum demersum HOM05D000181 ORTHO05D005757 3.7e-06 55.8 106 36.8
AUR62001684 Chenopodium quinoa HOM05D000181 ORTHO05D005757 3.7e-06 55.8 115 33.9
Gohir.A07G021700 Gossypium hirsutum HOM05D000181 ORTHO05D004115 3.7e-06 55.8 111 35.1
HanXRQChr05g0135651 Helianthus annuus HOM05D000181 ORTHO05D005757 3.7e-06 55.8 110 35.5
HanXRQChr06g0179431 Helianthus annuus HOM05D000181 ORTHO05D005757 3.7e-06 55.8 110 35.5
Lsat_1_v5_gn_8_71240 Lactuca sativa HOM05D000181 ORTHO05D005757 3.7e-06 55.8 110 35.5
CiPaw.13G080800 Carya illinoinensis HOM05D000181 ORTHO05D005757 4.8e-06 55.5 110 35.5
Lalb_Chr10g0103271 Lupinus albus HOM05D000181 ORTHO05D005757 4.8e-06 55.5 111 34.2
Potri.009G043100 Populus trichocarpa HOM05D000181 ORTHO05D005757 4.8e-06 55.5 110 36.4
VMungo0540G0029 Vigna mungo HOM05D000002 ORTHO05D005757 4.8e-06 55.5 110 35.5
arahy.Tifrunner.gnm1.ann1.70SKLQ Arachis hypogaea HOM05D000181 ORTHO05D005757 6.3e-06 55.1 111 34.2
arahy.Tifrunner.gnm1.ann1.ND684V Arachis hypogaea HOM05D000181 ORTHO05D005757 6.3e-06 55.1 111 34.2
ECA236G3476 Erigeron canadensis HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
Eucgr.B02274 Eucalyptus grandis HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
Glyma.14G192100 Glycine max HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
Gohir.A05G089900 Gossypium hirsutum HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
Gohir.D05G090800 Gossypium hirsutum HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
Manes.02G121800 Manihot esculenta HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
Nn2g13622 Nelumbo nucifera HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
Phvul.008G262300 Phaseolus vulgaris HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 34.5
QL01p026829 Quercus lobata HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
SGA_v2.0_scaffold39G15251 Striga asiatica HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
GSVIVG01024791001 Vitis vinifera HOM05D000181 ORTHO05D005757 6.3e-06 55.1 110 35.5
AUR62020098 Chenopodium quinoa HOM05D000181 ORTHO05D005757 8.2e-06 54.7 115 33.9
Glyma.02G225300 Glycine max HOM05D000181 ORTHO05D005757 8.2e-06 54.7 110 34.5
MBI05_g03462_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D005757 8.2e-06 54.7 110 35.5
PSO384G0122 Papaver somniferum HOM05D000181 ORTHO05D005757 8.2e-06 54.7 114 36.0
SalBow2G0286 Salvia bowleyana HOM05D000181 ORTHO05D005757 8.2e-06 54.7 110 35.5
Sed0008141 Sechium edule HOM05D000181 ORTHO05D005757 8.2e-06 54.7 110 35.5
Thecc.09G305500 Theobroma cacao HOM05D000181 ORTHO05D005757 8.2e-06 54.7 110 35.5
TAR633G2091 Trochodendron aralioides HOM05D000181 ORTHO05D005757 8.2e-06 54.7 110 34.5
unitig_8.g3694 Utricularia gibba HOM05D000181 ORTHO05D005757 8.2e-06 54.7 110 35.5


User provided reference genes

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