Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 2.3e-183 645.6 358 100.0
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 6.0e-168 594.3 358 88.3
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 5.1e-167 591.3 358 91.3
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.8e-164 582.8 358 87.4
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 5.3e-164 581.3 359 87.2
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 2.2e-162 575.9 358 87.4
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.1e-160 569.3 358 89.1
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 8.4e-154 547.4 358 86.6
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 6.0e-144 514.6 355 77.5
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 1.3e-143 513.5 356 76.7
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 1.1e-142 510.4 356 75.6
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 1.5e-139 500.0 354 76.3
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 2.2e-138 496.1 343 77.3
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 8.5e-138 494.2 342 81.9
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 3.2e-137 492.3 359 74.1
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 7.9e-136 487.6 347 74.9
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 2.3e-135 486.1 355 73.8
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 3.0e-135 485.7 355 73.8
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 3.9e-135 485.3 355 78.3
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 1.9e-134 483.0 348 74.7
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.3e-134 482.3 350 74.0
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 3.7e-133 478.8 355 76.3
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 3.7e-133 478.8 352 77.0
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 1.4e-132 476.9 356 75.0
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.4e-132 476.9 352 77.0
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 9.1e-132 474.2 355 76.3
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.5e-131 473.4 343 73.2
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 3.4e-131 472.2 357 76.5
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 4.5e-131 471.9 347 72.9
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.3e-130 470.3 354 76.6
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 5.0e-130 468.4 354 76.0
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.1e-129 467.2 356 75.8
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.4e-129 466.8 330 75.8
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 9.4e-129 464.2 340 80.0
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 2.7e-128 462.6 345 72.8
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 3.6e-128 462.2 371 73.9
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 3.6e-128 462.2 355 75.5
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 6.7e-127 458.0 354 70.3
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.5e-126 456.8 346 69.1
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.5e-126 456.8 346 69.4
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 2.6e-126 456.1 354 74.3
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.6e-126 456.1 345 75.9
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 4.4e-126 455.3 346 74.0
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 4.4e-126 455.3 434 59.9
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 7.4e-126 454.5 352 71.3
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 7.4e-126 454.5 328 72.0
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 9.7e-126 454.1 345 72.2
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 9.7e-126 454.1 360 73.3
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.2e-125 453.0 356 67.4
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 2.8e-125 452.6 350 75.1
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 6.3e-125 451.4 359 73.5
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 1.4e-124 450.3 277 92.4
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.8e-124 449.9 347 74.6
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.8e-124 449.9 355 67.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 3.1e-124 449.1 348 70.7
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 9.1e-124 447.6 337 75.1
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 1.5e-123 446.8 347 72.9
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.5e-123 446.8 354 73.4
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 2.0e-123 446.4 348 70.7
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.0e-123 446.4 355 67.3
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 2.6e-123 446.0 341 71.0
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.5e-123 445.3 340 71.8
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.5e-123 445.3 340 71.8
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.7e-122 443.4 384 64.1
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.1e-121 440.7 356 69.1
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.2e-121 438.7 353 72.8
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 4.2e-121 438.7 342 73.4
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 2.7e-120 436.0 319 77.1
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 1.4e-119 433.7 394 63.5
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.4e-119 433.7 335 68.7
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 3.9e-119 432.2 248 89.9
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 5.2e-119 431.8 328 71.3
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 1.3e-117 427.2 292 82.5
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 3.7e-117 425.6 352 70.7
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 4.8e-117 425.2 337 67.7
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 9.1e-116 421.0 336 66.7
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.6e-115 420.2 355 64.5
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 1.6e-115 420.2 293 76.5
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 2.6e-115 419.5 350 65.4
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 4.5e-115 418.7 350 65.4
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 5.9e-115 418.3 332 68.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 7.7e-115 417.9 349 65.3
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 7.7e-115 417.9 349 65.6
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 2.2e-114 416.4 350 65.4
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.2e-114 416.4 339 69.3
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 3.8e-114 415.6 346 65.3
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 4.2e-113 412.1 389 66.3
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.2e-112 410.6 318 73.3
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 2.7e-112 409.5 346 64.2
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 6.1e-112 408.3 355 62.0
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 5.2e-111 405.2 342 66.7
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.5e-110 403.7 284 74.6
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 2.0e-110 403.3 304 70.7
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.7e-110 401.7 346 64.2
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.3e-106 390.6 314 74.8
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 2.9e-106 389.4 333 68.2
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 1.1e-105 387.5 413 60.3
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.2e-104 384.0 350 65.7
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 5.2e-103 378.6 293 75.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.2e-102 377.5 322 68.3
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.1e-100 370.9 300 67.7
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 7.0e-100 368.2 348 60.3
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 2.3e-98 363.2 296 67.6
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.0e-95 354.4 400 61.0
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 6.3e-93 345.1 339 61.4
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.4e-92 344.0 205 88.3
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.6e-91 340.5 400 51.5
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.5e-91 339.3 440 48.9
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.5e-89 334.0 224 79.9
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.5e-86 323.9 349 52.7
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 3.4e-86 322.8 230 73.5
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.8e-84 317.0 250 72.4
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 7.0e-84 315.1 231 73.6
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 5.0e-82 308.9 244 75.8
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.1e-81 307.8 235 71.9
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 4.3e-81 305.8 231 72.3
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 3.6e-80 302.8 259 68.7
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.3e-69 267.7 370 49.2
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 2.9e-69 266.5 242 64.0
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 8.3e-69 265.0 341 46.6
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 2.7e-67 260.0 323 44.3
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 4.6e-67 259.2 178 84.8
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 2.3e-66 256.9 303 51.5
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 6.0e-59 232.3 339 40.7
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 2.4e-55 220.3 148 83.1
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 7.8e-51 205.3 170 77.6
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.7e-50 204.1 149 69.8
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 6.9e-47 192.2 146 67.8
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 1.5e-41 174.5 196 51.5
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.9e-41 174.1 129 69.0
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.9e-33 147.5 127 78.7
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 4.3e-33 146.4 365 32.3
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 1.3e-29 134.8 106 72.6
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.9e-29 132.9 100 72.0
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 3.2e-28 130.2 114 78.9
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 6.0e-27 125.9 100 69.0
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 4.8e-24 116.3 169 44.4
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 8.5e-21 105.5 78 66.7
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.1e-20 105.1 228 31.6
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 2.0e-17 94.4 88 58.0
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 2.5e-17 94.0 57 78.9
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 1.4e-15 88.2 72 63.9
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 6.9e-15 85.9 50 80.0
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 9.1e-15 85.5 53 83.0
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 4.5e-14 83.2 56 75.0
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 7.2e-12 75.9 48 79.2
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 6.1e-11 72.8 47 72.3
arahy.Tifrunner.gnm1.ann1.2X24PF Arachis hypogaea HOM05D002335 ORTHO05D006282 1.8e-10 71.2 57 70.2
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 7.4e-09 65.9 52 69.2
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 2.2e-08 64.3 70 54.3
arahy.Tifrunner.gnm1.ann1.TGKM3A Arachis hypogaea HOM05D002335 ORTHO05D006282 1.1e-07 62.0 45 68.9
arahy.Tifrunner.gnm1.ann1.6TY0FQ Arachis hypogaea HOM05D000237 ORTHO05D017465 9.1e-07 58.9 39 76.9


User provided reference genes

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