Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0009697 Lotus japonicus HOM05D003602 ORTHO05D236127 8.0e-58 226.9 114 100.0
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 3.6e-10 68.6 104 44.2
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 1.8e-09 66.2 104 43.3
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 4.0e-09 65.1 104 44.2
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 1.5e-08 63.2 104 41.3
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 2.6e-08 62.4 89 47.2
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 3.4e-08 62.0 89 47.2
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 3.4e-08 62.0 101 42.6
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 4.5e-08 61.6 80 47.5
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 9.9e-08 60.5 84 45.2
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 9.9e-08 60.5 96 40.6
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 9.9e-08 60.5 104 43.3
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 1.3e-07 60.1 95 44.2
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 1.7e-07 59.7 84 45.2
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 1.7e-07 59.7 83 47.0
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.7e-07 59.7 80 45.0
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.7e-07 59.7 79 46.8
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 2.2e-07 59.3 83 43.4
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 2.2e-07 59.3 112 39.3
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 2.2e-07 59.3 108 39.8
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 3.8e-07 58.5 84 42.9
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 4.9e-07 58.2 84 44.0
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 4.9e-07 58.2 77 45.5
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 4.9e-07 58.2 81 43.2
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 4.9e-07 58.2 109 41.3
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 4.9e-07 58.2 103 40.8
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 6.4e-07 57.8 86 41.9
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 6.4e-07 57.8 112 38.4
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 6.4e-07 57.8 84 44.0
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 8.4e-07 57.4 104 38.5
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 1.1e-06 57.0 99 41.4
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 1.4e-06 56.6 86 43.0
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 1.4e-06 56.6 85 45.9
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 1.9e-06 56.2 88 42.0
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 1.9e-06 56.2 88 42.0
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 1.9e-06 56.2 88 42.0
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 1.9e-06 56.2 83 43.4
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 2.4e-06 55.8 101 35.6
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 2.4e-06 55.8 113 38.9
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 2.4e-06 55.8 89 42.7
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 2.4e-06 55.8 88 42.0
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 2.4e-06 55.8 109 39.4
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 3.2e-06 55.5 84 42.9
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 3.2e-06 55.5 88 38.6
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 4.2e-06 55.1 86 40.7
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 4.2e-06 55.1 91 38.5
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 4.2e-06 55.1 91 40.7
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 4.2e-06 55.1 108 39.8
ECA240G0654 Erigeron canadensis HOM05D003602 ORTHO05D004808 5.5e-06 54.7 92 35.9
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 5.5e-06 54.7 85 40.0
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 7.1e-06 54.3 84 41.7
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 7.1e-06 54.3 91 39.6
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 7.1e-06 54.3 91 39.6
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 7.1e-06 54.3 84 41.7
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 7.1e-06 54.3 82 40.2
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 7.1e-06 54.3 109 38.5
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 7.1e-06 54.3 93 37.6
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 9.3e-06 53.9 85 41.2
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 9.3e-06 53.9 91 38.5
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 9.3e-06 53.9 91 38.5
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 9.3e-06 53.9 88 42.0
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 9.3e-06 53.9 84 42.9


User provided reference genes

Program Settings