Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 2.1e-97 359.0 180 100.0
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 2.8e-89 332.0 180 91.1
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 3.1e-88 328.6 180 90.0
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 9.0e-88 327.0 180 90.6
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.2e-87 326.6 180 90.0
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 2.2e-86 322.4 180 88.3
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 6.4e-86 320.9 183 88.0
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-85 320.1 183 87.4
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 1.1e-85 320.1 180 87.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.9e-85 319.3 180 87.8
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 7.1e-85 317.4 180 88.3
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.3e-83 313.2 183 86.3
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 6.7e-83 310.8 183 84.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 85.1
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 84.5
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 85.1
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 84.5
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 4.3e-82 308.1 181 85.1
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 7.4e-82 307.4 183 83.6
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 9.6e-82 307.0 181 84.5
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.6e-81 306.2 183 83.6
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.6e-81 306.2 183 83.6
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.6e-81 306.2 181 85.1
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 2.8e-81 305.4 183 83.6
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 8.1e-81 303.9 183 83.6
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 84.0
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 1.1e-80 303.5 183 83.1
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 82.9
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.4e-80 303.1 183 82.0
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 82.3
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 84.0
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 3.1e-80 302.0 183 81.4
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 4.0e-80 301.6 183 82.0
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 4.0e-80 301.6 183 82.5
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.3e-80 301.2 183 81.4
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 6.9e-80 300.8 181 81.2
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 6.9e-80 300.8 183 83.1
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 9.0e-80 300.4 181 82.3
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.5e-79 299.7 183 82.0
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.0e-79 299.3 183 82.5
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.0e-79 299.3 183 83.1
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 2.6e-79 298.9 183 80.9
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.8e-79 297.7 183 80.3
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.3e-78 296.6 181 81.2
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.9e-78 294.7 183 81.4
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 8.4e-78 293.9 179 82.7
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 8.4e-78 293.9 183 78.1
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 8.4e-78 293.9 183 79.2
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.4e-77 293.1 181 79.0
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.4e-77 293.1 183 78.7
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 1.9e-77 292.7 183 79.8
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 2.5e-77 292.4 181 79.0
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 4.2e-77 291.6 183 79.8
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.5e-77 291.2 181 77.9
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 5.5e-77 291.2 178 80.9
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 5.5e-77 291.2 170 85.9
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 7.1e-77 290.8 181 77.9
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 9.3e-77 290.4 178 78.1
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.2e-76 290.0 183 79.2
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 6.0e-76 287.7 177 80.2
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 7.9e-76 287.3 178 80.9
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.9e-76 287.3 170 82.9
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.0e-75 287.0 177 79.7
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.8e-75 286.2 170 82.4
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.8e-75 286.2 183 78.1
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.3e-75 285.8 179 79.3
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.3e-75 285.8 178 78.7
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.3e-75 285.8 178 80.3
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 2.3e-75 285.8 178 79.8
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 2.3e-75 285.8 178 79.8
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 2.3e-75 285.8 178 79.8
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 3.0e-75 285.4 169 84.6
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.0e-75 285.4 183 77.6
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 3.0e-75 285.4 205 72.7
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 3.9e-75 285.0 178 80.3
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 8.7e-75 283.9 178 80.3
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 8.7e-75 283.9 178 78.7
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.1e-74 283.5 183 76.5
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-74 283.1 178 79.2
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.9e-74 282.7 178 79.2
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 3.3e-74 282.0 176 79.0
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 4.3e-74 281.6 178 79.8
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 4.3e-74 281.6 178 79.8
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 4.3e-74 281.6 178 78.1
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.7e-74 281.2 172 81.4
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 7.4e-74 280.8 178 78.1
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 1.6e-73 279.6 179 78.8
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.6e-73 279.6 179 78.8
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 3.7e-73 278.5 183 75.4
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.7e-73 278.5 183 77.6
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.8e-73 278.1 176 77.8
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 6.3e-73 277.7 170 80.6
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 6.3e-73 277.7 183 73.2
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 6.3e-73 277.7 185 75.1
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 6.3e-73 277.7 185 75.1
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.3e-73 277.7 183 76.0
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.3e-73 277.7 183 76.0
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 8.2e-73 277.3 179 78.2
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 8.2e-73 277.3 179 78.2
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 8.2e-73 277.3 179 78.2
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-72 276.9 179 78.2
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.1e-72 276.9 202 72.3
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.1e-72 276.9 172 79.1
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 2.4e-72 275.8 181 76.2
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 4.1e-72 275.0 171 78.9
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 5.3e-72 274.6 167 79.6
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 9.0e-72 273.9 179 77.7
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 3.4e-71 271.9 181 74.6
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 5.9e-71 271.2 170 80.0
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 1.0e-70 270.4 170 80.0
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 2.2e-70 269.2 179 77.1
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 6.5e-70 267.7 159 82.4
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 6.5e-70 267.7 171 77.8
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 7.2e-69 264.2 177 74.6
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.2e-68 263.5 170 77.1
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 2.1e-68 262.7 171 77.8
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.6e-68 261.9 178 73.6
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 6.1e-68 261.2 178 73.0
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 7.9e-68 260.8 181 72.9
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.3e-67 260.0 177 73.4
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 1.3e-67 260.0 165 73.3
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 2.3e-67 259.2 170 74.7
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 3.0e-67 258.8 170 74.1
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 9.7e-66 253.8 170 74.7
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.8e-65 252.3 260 55.8
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.8e-64 249.6 184 67.4
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 3.1e-64 248.8 179 66.5
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.5e-63 246.5 152 82.2
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 9.4e-61 237.3 175 64.0
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 7.9e-60 234.2 153 77.1
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 6.7e-59 231.1 175 62.9
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 2.2e-57 226.1 174 61.5
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 6.9e-56 221.1 178 60.7
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.0e-55 219.5 181 66.9
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 3.1e-48 195.7 182 52.7
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.3e-46 190.3 134 69.4
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 9.1e-40 167.5 170 54.1
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.9e-37 159.8 102 83.3
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.1e-32 144.1 118 64.4
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 5.4e-32 141.7 104 73.1
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.2e-31 140.6 80 82.5
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 2.3e-30 136.3 170 39.4
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 3.8e-30 135.6 178 43.3
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.3e-25 120.6 69 78.3
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 7.0e-24 114.8 76 77.6
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 7.0e-24 114.8 76 77.6
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.1e-21 107.5 100 56.0
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 3.3e-21 105.9 207 40.6
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.3e-21 105.5 57 80.7
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 8.0e-20 101.3 54 88.9
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.9e-17 92.8 145 38.6
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 4.9e-17 92.0 83 60.2
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 1.1e-16 90.9 146 35.6
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 7.8e-15 84.7 64 68.8
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 5.0e-14 82.0 89 50.6
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 3.6e-12 75.9 87 51.7
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-11 73.9 37 94.6
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 1.2e-10 70.9 49 69.4
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 3.4e-10 69.3 51 68.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 2.9e-09 66.2 38 86.8
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 3.7e-09 65.9 63 55.6
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 6.4e-09 65.1 50 68.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.2e-07 60.8 64 50.0
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 6.0e-07 58.5 33 81.8


User provided reference genes

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