Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 1.4e-63 246.5 168 100.0
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 8.2e-59 230.7 168 76.2
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.8e-48 195.3 170 65.3
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 4.7e-46 188.3 170 65.3
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.8e-45 186.4 170 62.4
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 3.9e-45 185.3 168 73.2
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.1e-44 183.7 170 61.8
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.5e-44 183.3 169 78.7
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.3e-43 180.3 180 76.1
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 7.0e-42 174.5 172 62.8
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.6e-41 173.3 168 71.4
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.6e-41 173.3 169 59.8
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.6e-41 172.6 186 71.0
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 7.7e-41 171.0 171 57.3
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 1.0e-40 170.6 176 69.3
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 2.2e-40 169.5 166 55.4
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 3.8e-40 168.7 168 63.7
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 5.0e-40 168.3 168 57.1
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 6.5e-40 167.9 178 68.5
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 6.5e-40 167.9 178 68.5
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 8.5e-40 167.5 178 68.5
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 1.9e-39 166.4 171 54.4
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 1.9e-39 166.4 173 59.0
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 3.2e-39 165.6 168 54.2
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.2e-39 165.2 169 58.0
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 5.5e-39 164.9 169 58.6
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 7.2e-39 164.5 179 58.1
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 9.4e-39 164.1 172 55.2
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 2.1e-38 162.9 171 67.3
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 2.7e-38 162.5 177 62.1
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 3.6e-38 162.2 157 72.0
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 3.6e-38 162.2 164 56.7
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 6.1e-38 161.4 169 69.2
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 8.0e-38 161.0 176 57.4
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 8.0e-38 161.0 169 65.1
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 1.0e-37 160.6 163 66.3
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.8e-37 159.8 170 52.9
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.3e-37 159.5 173 64.2
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 3.0e-37 159.1 176 56.8
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.0e-37 159.1 172 57.0
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 3.0e-37 159.1 166 69.3
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 3.0e-37 159.1 170 55.3
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 3.0e-37 159.1 179 58.7
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.0e-37 158.7 171 65.5
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 6.7e-37 157.9 170 52.4
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 6.7e-37 157.9 172 57.0
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 8.8e-37 157.5 183 53.6
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 2.0e-36 156.4 178 59.0
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.4e-36 155.2 172 55.8
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 4.4e-36 155.2 170 68.2
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 7.5e-36 154.5 179 63.1
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 7.5e-36 154.5 171 52.0
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 9.7e-36 154.1 171 53.8
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 9.7e-36 154.1 170 52.4
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.3e-35 153.7 167 65.3
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.3e-35 153.7 170 62.9
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.7e-35 153.3 168 58.9
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.7e-35 153.3 167 67.1
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.7e-35 153.3 168 51.8
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 2.8e-35 152.5 170 64.7
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.4e-34 150.2 168 51.8
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.4e-34 150.2 172 55.2
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.8e-34 149.8 166 65.7
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.4e-34 149.4 166 51.8
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 2.4e-34 149.4 164 57.3
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 4.1e-34 148.7 170 50.6
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 7.0e-34 147.9 165 50.9
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.2e-33 147.1 151 67.5
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.6e-33 146.7 178 54.5
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 3.5e-33 145.6 166 64.5
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.0e-32 144.1 169 50.9
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.0e-32 144.1 169 50.9
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.0e-32 144.1 129 74.4
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 2.9e-32 142.5 154 66.9
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 2.9e-32 142.5 160 65.6
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.5e-31 140.2 171 61.4
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 5.5e-31 138.3 172 60.5
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 7.2e-31 137.9 106 67.9
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 7.2e-31 137.9 185 46.5
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 1.6e-30 136.7 157 61.8
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 2.1e-30 136.3 170 49.4
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 2.1e-30 136.3 166 63.9
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 2.7e-30 136.0 173 48.0
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 2.7e-30 136.0 168 48.2
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 3.6e-30 135.6 177 59.9
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 4.7e-30 135.2 175 47.4
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.0e-29 134.0 175 46.9
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.8e-29 133.3 172 46.5
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.8e-29 133.3 173 46.8
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.8e-29 133.3 173 46.8
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 1.8e-29 133.3 177 51.4
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.3e-29 132.9 173 46.8
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 3.0e-29 132.5 174 47.7
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 4.0e-29 132.1 173 46.2
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 4.0e-29 132.1 169 49.1
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 5.2e-29 131.7 161 47.2
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.2e-28 130.6 169 49.7
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.5e-28 130.2 172 45.3
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 1.5e-28 130.2 172 60.5
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.3e-27 127.1 168 46.4
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.7e-27 126.7 168 60.7
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.7e-27 126.7 116 59.5
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.2e-27 126.3 172 44.2
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 2.8e-27 125.9 179 55.3
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 6.3e-27 124.8 106 76.4
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 1.4e-26 123.6 118 55.9
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.8e-26 123.2 166 43.4
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 4.1e-26 122.1 102 60.8
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 5.4e-26 121.7 168 50.0
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 9.1e-26 120.9 168 54.2
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 1.6e-25 120.2 171 44.4
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.6e-25 120.2 112 58.9
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 5.9e-25 118.2 104 62.5
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 7.7e-25 117.9 239 36.4
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.5e-23 112.8 129 55.0
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 3.2e-23 112.5 106 75.5
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 7.2e-23 111.3 106 73.6
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 1.2e-22 110.5 115 53.9
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 4.7e-22 108.6 115 53.9
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.0e-21 105.9 130 46.2
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 5.2e-21 105.1 110 58.2
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.2e-20 104.0 162 40.1
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 5.7e-20 101.7 109 58.7
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 9.8e-20 100.9 175 36.6
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 3.7e-19 99.0 106 49.1
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.6e-17 93.6 178 37.1
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.2e-14 84.0 103 47.6
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.2e-14 84.0 103 47.6
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 2.1e-14 83.2 97 50.5
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 3.6e-14 82.4 176 33.5
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 5.7e-12 75.1 185 33.5
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 9.8e-12 74.3 80 51.2
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 4.9e-11 72.0 169 34.9
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 1.8e-10 70.1 76 51.3
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 1.6e-06 57.0 56 48.2


User provided reference genes

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