Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1997.2 1008 100.0
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1748.4 1004 88.0
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1713.0 1004 87.0
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1709.5 1005 86.7
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1705.6 1004 85.7
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1646.7 1008 82.7
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1627.1 964 85.7
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1624.8 1007 82.6
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1588.5 1006 80.1
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1577.4 1006 78.7
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1573.5 1082 75.7
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1567.4 1014 79.3
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1558.5 1008 78.7
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1557.7 1008 77.5
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1548.9 1007 77.6
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1543.5 1008 76.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1535.4 1008 76.6
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1532.7 1033 75.1
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1531.2 1006 76.8
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1530.0 1033 75.0
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1530.0 1008 76.5
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1528.1 1021 76.0
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1523.8 1008 75.7
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1521.5 1026 75.4
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1517.7 1013 76.1
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1515.4 1044 73.8
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1509.2 1018 75.2
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1508.8 1011 75.7
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1508.0 1005 75.7
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1503.0 965 78.8
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1502.6 1011 76.3
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1502.6 1015 75.4
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1490.7 1006 74.7
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1489.9 1009 74.6
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1486.5 1014 74.4
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1480.3 1004 75.0
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1007 74.3
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1474.1 1016 73.2
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1017 74.8
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1472.2 1014 74.7
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1468.0 1006 74.8
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1465.7 1012 74.2
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1463.0 1006 73.1
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1462.6 1017 73.1
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1461.8 1011 73.4
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1461.4 1015 72.8
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1459.9 1006 74.2
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1458.4 1015 72.7
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1457.2 1004 75.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1457.2 1015 72.6
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1451.8 1004 75.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1447.2 1032 71.7
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1444.9 1025 72.0
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1444.1 1014 72.7
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1436.8 1053 70.4
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1434.9 1005 72.8
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 1011 71.8
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1433.3 1006 71.3
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1432.9 1011 71.7
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1427.9 1012 71.6
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1426.4 969 75.1
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1426.0 1021 70.7
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 1008 71.8
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 1008 71.7
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1424.8 1008 71.8
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1424.8 1012 71.7
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1422.9 1009 72.0
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1422.5 1005 71.3
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 1008 71.5
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1420.2 1037 71.4
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1418.3 1026 70.2
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1417.1 1008 71.7
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1417.1 1005 71.3
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1416.0 1013 71.9
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1415.2 1011 71.2
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1414.4 1004 71.2
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1411.7 931 77.3
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1411.4 1024 72.2
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1401.3 1019 71.1
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1398.3 1009 70.2
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1390.9 1015 69.7
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1389.4 1005 69.1
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1383.2 1031 69.3
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1378.6 1045 67.9
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1370.1 984 70.0
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1369.4 1103 66.2
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1361.7 1029 67.7
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1353.6 1009 70.8
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1352.0 1007 67.8
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1347.0 1003 69.0
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1339.3 1140 62.6
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1323.9 1021 66.9
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1321.6 1171 60.7
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 1012 68.2
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1314.3 1009 66.8
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1307.0 983 67.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1303.9 1013 65.7
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1303.1 1008 66.4
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1302.3 1008 66.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1295.4 984 68.3
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1291.9 1008 65.9
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1280.4 1006 65.9
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1271.9 1029 64.5
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1269.6 1010 65.1
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1263.4 966 67.4
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1245.7 1011 63.7
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1238.4 862 73.3
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1230.7 943 66.5
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1225.7 911 68.9
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1217.2 1010 63.8
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1215.3 1040 62.9
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1214.1 1002 60.8
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1205.3 1009 63.1
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1198.3 1029 59.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1187.6 1013 59.5
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1149.0 908 66.6
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1129.0 1009 61.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1123.2 946 60.9
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1119.4 809 71.2
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1118.2 853 67.1
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.3e-297 1025.8 945 58.4
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 2.5e-288 995.7 638 80.7
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.1e-278 962.2 890 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.1e-270 937.2 1033 50.7
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.4e-270 936.0 1031 50.8
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.9e-268 928.3 778 63.6
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 3.5e-266 922.2 620 76.0
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 8.7e-265 917.5 630 73.8
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.8e-254 883.2 1013 48.8
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.7e-240 835.1 1018 47.0
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.5e-237 827.0 1035 45.3
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.5e-227 793.9 1219 41.9
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.6e-226 790.4 618 65.2
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 7.5e-216 755.0 883 45.6
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 3.3e-203 713.0 388 90.2
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 9.5e-187 658.3 469 75.7
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 2.0e-184 650.6 439 78.4
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.3e-170 604.7 350 84.0
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 4.9e-159 566.2 389 74.6
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.5e-150 537.3 563 53.5
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 9.0e-145 518.8 544 52.8
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.0e-112 411.4 258 82.6
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 6.5e-111 406.4 281 74.7
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 1.6e-104 385.2 237 82.3
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 4.2e-102 377.1 205 84.4
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 5.5e-102 376.7 291 72.5
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 2.1e-85 321.6 239 66.5
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.4e-84 318.9 257 69.6
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 3.4e-83 314.3 845 29.7
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-82 311.6 307 61.9
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-76 292.7 162 83.3
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.3e-74 285.8 221 65.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.9e-71 274.2 150 84.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.1e-48 198.7 200 58.5
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.0e-47 196.4 132 78.8
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 2.3e-47 195.3 482 30.9
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 5.1e-47 194.1 147 73.5
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.1e-46 193.0 114 76.3
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 8.1e-45 186.8 153 63.4
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 8.4e-42 176.8 130 73.1
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.9e-40 170.2 90 80.0
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.2e-34 152.1 113 74.3
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.3e-31 142.9 88 76.1
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.1e-28 133.3 77 76.6
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.4e-25 122.9 83 74.7
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.1e-24 117.5 96 60.4
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 4.3e-22 111.3 112 52.7
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.6e-19 102.1 98 55.1
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.6e-19 102.1 98 55.1
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.3e-18 99.8 80 63.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.6e-16 92.8 86 65.1
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 5.9e-11 74.3 48 70.8
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.2e-10 72.4 80 55.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 7.2e-09 67.4 65 50.8


User provided reference genes

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