Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 2.1e-127 459.1 252 100.0
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 6.7e-97 357.8 229 83.0
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 2.1e-95 352.8 233 80.7
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 6.9e-94 347.8 231 79.7
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 2.5e-91 339.3 229 79.5
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 7.4e-88 327.8 228 75.9
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 1.4e-86 323.6 233 72.1
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 2.2e-84 316.2 225 72.4
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 4.2e-83 312.0 226 72.6
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 7.9e-82 307.8 266 63.5
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 1.5e-80 303.5 194 79.4
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 2.0e-69 266.5 230 60.4
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 2.6e-69 266.2 221 60.6
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 8.5e-68 261.2 230 59.1
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 9.4e-67 257.7 207 64.3
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 1.6e-66 256.9 239 55.2
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 2.3e-65 253.1 229 58.5
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 4.4e-64 248.8 247 51.8
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 5.7e-64 248.4 230 54.8
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 3.7e-63 245.7 203 57.6
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.7e-60 236.9 230 53.0
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 2.9e-60 236.1 223 52.9
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 5.0e-60 235.3 201 55.7
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.1e-58 228.4 252 47.6
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 2.6e-56 223.0 217 52.1
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 7.4e-56 221.5 222 50.5
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 9.7e-56 221.1 208 52.4
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.7e-55 220.3 237 50.6
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 2.2e-55 219.9 202 55.9
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 8.2e-55 218.0 236 50.8
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 1.8e-54 216.9 228 53.1
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.4e-54 216.5 211 52.1
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 4.1e-54 215.7 196 55.6
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 4.1e-54 215.7 208 51.4
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 5.3e-54 215.3 211 51.7
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 2.0e-53 213.4 222 51.8
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 3.5e-53 212.6 200 52.5
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 7.7e-53 211.5 218 49.5
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.0e-52 211.1 226 50.0
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 2.2e-52 209.9 226 50.0
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 3.8e-52 209.1 226 47.8
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 3.8e-52 209.1 321 39.3
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 3.8e-52 209.1 225 47.6
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 6.5e-52 208.4 201 52.2
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 1.1e-51 207.6 227 46.7
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 5.5e-51 205.3 171 60.8
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.6e-50 203.8 203 47.8
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 2.1e-50 203.4 204 49.5
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 2.7e-50 203.0 188 57.4
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 3.6e-50 202.6 201 50.2
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 3.6e-50 202.6 230 47.0
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 1.8e-49 200.3 195 49.2
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 2.3e-49 199.9 198 51.5
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 4.0e-49 199.1 195 48.7
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 2.0e-48 196.8 208 48.6
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 5.7e-48 195.3 220 49.5
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.3e-47 194.1 219 49.3
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 2.2e-47 193.4 201 47.8
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.1e-46 191.0 194 46.9
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 1.4e-46 190.7 196 45.9
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.8e-46 190.3 210 45.7
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.4e-46 189.9 225 42.7
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 4.1e-46 189.1 196 45.4
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 5.3e-46 188.7 223 42.6
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.2e-45 187.6 228 42.1
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.6e-45 187.2 236 44.5
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 2.0e-45 186.8 194 45.9
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 2.0e-45 186.8 194 45.9
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 1.0e-44 184.5 193 45.6
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 1.0e-44 184.5 193 45.6
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 3.8e-44 182.6 192 46.4
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 5.0e-44 182.2 190 49.5
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 5.5e-43 178.7 167 55.7
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 1.6e-42 177.2 193 45.1
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 1.4e-41 174.1 202 47.0
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 1.4e-41 174.1 191 48.7
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 2.3e-41 173.3 202 42.1
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 1.5e-40 170.6 168 51.8
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 2.0e-40 170.2 167 51.5
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.6e-40 169.9 166 52.4
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 7.5e-40 168.3 200 44.0
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 1.4e-38 164.1 218 45.0
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 2.4e-38 163.3 195 44.1
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 2.7e-37 159.8 160 51.2
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.0e-36 157.9 198 41.4
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 1.3e-36 157.5 208 43.8
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.7e-36 157.1 169 53.8
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 2.3e-36 156.8 210 42.4
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 3.8e-36 156.0 166 52.4
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.4e-33 147.5 191 42.9
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 5.2e-33 145.6 149 51.0
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 1.7e-31 140.6 338 32.2
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 1.4e-30 137.5 121 54.5
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 3.9e-28 129.4 142 46.5
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.5e-27 127.5 136 46.3
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 5.6e-27 125.6 86 68.6
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 3.0e-20 103.2 233 31.8
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 8.6e-20 101.7 141 39.0
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 5.2e-17 92.4 197 29.4
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 3.4e-16 89.7 95 48.4
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 9.8e-16 88.2 88 55.7
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 6.4e-15 85.5 80 53.8
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 4.1e-14 82.8 189 28.6
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 9.2e-14 81.6 87 51.7
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 4.6e-13 79.3 78 51.3
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 1.0e-12 78.2 235 28.9
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 1.3e-12 77.8 88 52.3
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 1.7e-12 77.4 88 51.1
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 3.0e-12 76.6 65 61.5
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 3.0e-12 76.6 81 50.6
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 1.1e-11 74.7 199 28.1
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 2.5e-11 73.6 187 29.9
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 2.5e-11 73.6 225 27.6
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 3.3e-11 73.2 188 30.3
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 4.3e-11 72.8 185 28.1
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 4.3e-11 72.8 187 28.9
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 5.6e-11 72.4 223 27.8
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 7.3e-11 72.0 223 27.4
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 7.3e-11 72.0 77 48.1
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 7.3e-11 72.0 185 27.6
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 9.5e-11 71.6 185 25.9
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.6e-10 70.9 184 27.2
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.6e-10 70.9 184 27.2
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.6e-10 70.9 187 29.9
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 1.6e-10 70.9 96 37.5
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.6e-10 70.9 234 28.2
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 2.1e-10 70.5 188 29.3
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 2.1e-10 70.5 224 28.1
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 2.8e-10 70.1 187 26.7
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 2.8e-10 70.1 240 26.7
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 2.8e-10 70.1 233 28.3
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 2.8e-10 70.1 185 27.0
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 3.6e-10 69.7 188 28.7
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 4.7e-10 69.3 232 27.2
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 4.7e-10 69.3 222 27.0
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 4.7e-10 69.3 204 27.9
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 6.2e-10 68.9 224 28.6
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 8.1e-10 68.6 235 28.9
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 8.1e-10 68.6 222 27.9
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 8.1e-10 68.6 226 27.0
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.1e-09 68.2 225 28.0
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 1.1e-09 68.2 187 28.3
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.1e-09 68.2 223 27.4
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 1.1e-09 68.2 225 24.4
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.8e-09 67.4 188 26.6
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.8e-09 67.4 188 26.6
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 1.8e-09 67.4 188 26.6
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 2.3e-09 67.0 184 25.5
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 3.1e-09 66.6 64 57.8
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 4.0e-09 66.2 187 27.3
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 4.0e-09 66.2 233 28.8
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 6.8e-09 65.5 222 25.7
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 2.0e-08 63.9 188 25.5
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 1.3e-07 61.2 57 56.1
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 1.4e-06 57.8 218 25.2
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 1.9e-06 57.4 207 25.6
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 1.9e-06 57.4 228 25.4
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 3.2e-06 56.6 66 54.5
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 3.2e-06 56.6 210 25.7


User provided reference genes

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