Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 6.5e-234 813.9 483 100.0
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 9.2e-188 660.6 728 63.3
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 4.0e-183 645.2 770 59.9
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 7.4e-129 464.9 684 53.4
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 5.9e-126 455.3 473 57.3
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 1.4e-119 434.1 585 49.9
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 1.1e-111 407.9 473 54.3
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 3.2e-108 396.4 588 46.3
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 6.7e-106 388.7 430 55.6
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 1.7e-101 374.0 473 52.0
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 1.4e-90 337.8 639 42.9
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.4e-90 337.8 639 42.9
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 3.0e-90 336.7 610 40.3
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 2.0e-57 227.6 453 37.5
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 2.6e-57 227.3 456 35.7
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 3.5e-54 216.9 409 37.2
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 6.9e-50 202.6 411 35.0
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 9.9e-49 198.7 449 34.3
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.7e-48 198.0 263 48.3
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 2.9e-48 197.2 514 32.7
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 4.9e-48 196.4 476 36.1
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 1.4e-47 194.9 495 31.7
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 1.4e-47 194.9 483 33.5
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 1.9e-47 194.5 461 33.0
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.2e-47 193.4 399 36.3
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 9.3e-47 192.2 420 33.6
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.2e-46 191.8 450 33.3
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 7.8e-46 189.1 478 32.4
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 2.3e-45 187.6 471 32.7
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 5.1e-45 186.4 512 32.6
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 2.5e-44 184.1 433 34.4
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 3.3e-44 183.7 456 32.0
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 5.6e-44 183.0 506 32.2
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 7.3e-44 182.6 470 32.6
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 2.6e-41 174.1 464 30.6
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 2.6e-41 174.1 382 33.2
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 3.4e-41 173.7 477 32.7
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 3.8e-40 170.2 456 32.2
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 1.4e-39 168.3 491 30.5
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 1.9e-39 167.9 476 33.2
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 4.6e-38 163.3 307 34.9
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 8.7e-37 159.1 444 31.1
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.5e-36 158.3 223 46.2
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 1.5e-36 158.3 453 29.4
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 1.6e-35 154.8 499 29.7
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 8.1e-35 152.5 495 30.1
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 1.1e-34 152.1 279 38.0
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 1.1e-34 152.1 276 40.9
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 2.4e-34 151.0 498 30.1
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 3.1e-34 150.6 280 37.1
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 3.1e-34 150.6 498 29.1
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 4.0e-34 150.2 499 30.1
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 7.6e-33 146.0 452 29.6
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 3.8e-32 143.7 369 30.1
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 6.5e-32 142.9 432 28.7
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 1.1e-31 142.1 471 29.3
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 1.4e-31 141.7 287 36.6
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 2.5e-31 141.0 501 29.7
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 9.3e-31 139.0 272 39.0
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 1.2e-30 138.7 284 38.7
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 1.6e-30 138.3 212 43.9
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 2.1e-30 137.9 500 28.2
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 2.1e-30 137.9 315 37.1
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 2.1e-30 137.9 263 38.4
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 2.1e-30 137.9 369 29.5
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 2.7e-30 137.5 326 29.8
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 3.5e-30 137.1 474 28.3
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 6.0e-30 136.3 466 27.7
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 7.9e-30 136.0 188 45.7
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 1.3e-29 135.2 487 28.1
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 3.0e-29 134.0 365 30.4
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.1e-28 132.1 313 31.9
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 1.1e-28 132.1 368 27.7
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 1.9e-28 131.3 170 48.8
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 2.5e-28 131.0 365 28.2
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 5.7e-28 129.8 265 38.9
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 1.6e-27 128.3 364 29.4
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 4.8e-27 126.7 397 26.7
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 1.8e-26 124.8 169 46.7
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 2.4e-26 124.4 456 26.3
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 6.9e-26 122.9 508 28.7
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 2.6e-25 120.9 360 30.0
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 1.7e-24 118.2 233 40.8
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 5.0e-24 116.7 341 29.3
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 1.9e-23 114.8 474 25.7
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 2.3e-21 107.8 102 57.8
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 3.0e-21 107.5 466 26.8
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 3.3e-20 104.0 211 38.4
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 8.2e-19 99.4 272 32.4
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 9.0e-18 95.9 314 30.6
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 4.5e-17 93.6 259 30.1
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.8e-16 90.5 201 36.3
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 6.5e-16 89.7 277 30.7
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 9.4e-15 85.9 150 34.7
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 1.0e-13 82.4 202 31.2
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 1.4e-13 82.0 369 27.6
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 3.9e-13 80.5 86 51.2
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.5e-12 77.8 277 28.5
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 1.1e-10 72.4 165 33.3
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 4.1e-10 70.5 69 55.1
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 1.5e-09 68.6 172 33.7
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.6e-09 67.8 157 40.8
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 5.0e-08 63.5 109 36.7
COL.COLO4_16179 Corchorus olitorius HOM05D003845 ORTHO05D004161 7.9e-06 56.2 193 31.6


User provided reference genes

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