Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 1.2e-44 182.6 81 100.0
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 1.5e-26 122.5 84 71.4
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.7e-25 119.0 89 67.4
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 5.8e-18 94.0 82 62.2
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 7.5e-18 93.6 84 59.5
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 7.5e-18 93.6 89 56.2
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 7.8e-15 83.6 84 58.3
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 4.7e-12 74.3 79 50.6
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.4e-11 72.8 81 42.0
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 2.3e-11 72.0 76 51.3
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 2.3e-11 72.0 78 42.3
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 3.1e-11 71.6 82 47.6
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 3.1e-11 71.6 75 45.3
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 3.1e-11 71.6 75 45.3
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.2e-11 70.9 68 42.6
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.2e-11 70.9 68 44.1
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.2e-10 69.7 80 47.5
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.5e-10 69.3 75 48.0
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.5e-10 69.3 75 46.7
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.0e-10 68.9 76 46.1
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.4e-10 67.8 68 42.6
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 5.8e-10 67.4 82 43.9
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 5.8e-10 67.4 70 42.9
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 7.5e-10 67.0 77 45.5
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 7.5e-10 67.0 72 38.9
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 7.5e-10 67.0 74 41.9
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 7.5e-10 67.0 73 45.2
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 9.9e-10 66.6 80 38.8
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.3e-09 66.2 79 36.7
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.3e-09 66.2 76 44.7
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.7e-09 65.9 79 40.5
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 2.2e-09 65.5 75 44.0
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.2e-09 65.5 81 43.2
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 2.2e-09 65.5 79 43.0
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 2.2e-09 65.5 78 43.6
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.9e-09 65.1 71 39.4
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.9e-09 65.1 78 37.2
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.9e-09 64.3 72 43.1
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 4.9e-09 64.3 75 46.7
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 6.4e-09 63.9 72 43.1
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 6.4e-09 63.9 72 44.4
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 8.3e-09 63.5 72 43.1
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 8.3e-09 63.5 73 42.5
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 8.3e-09 63.5 72 44.4
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 1.1e-08 63.2 72 43.1
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 1.1e-08 63.2 72 43.1
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.4e-08 62.8 80 38.8
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.4e-08 62.8 71 43.7
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.4e-08 62.0 73 39.7
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 2.4e-08 62.0 73 39.7
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.4e-08 62.0 66 42.4
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 2.4e-08 62.0 76 39.5
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 3.2e-08 61.6 73 42.5
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 3.2e-08 61.6 72 41.7
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.2e-08 61.6 73 39.7
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 4.1e-08 61.2 79 39.2
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.1e-08 61.2 80 42.5
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.1e-08 61.2 71 35.2
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 5.4e-08 60.8 73 41.1
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 5.4e-08 60.8 79 45.6
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.4e-08 60.8 36 63.9
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 5.4e-08 60.8 75 41.3
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 7.1e-08 60.5 77 39.0
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 7.1e-08 60.5 58 43.1
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 7.1e-08 60.5 76 40.8
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.2e-07 59.7 56 44.6
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.2e-07 59.7 39 53.8
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 1.6e-07 59.3 79 36.7
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 1.6e-07 59.3 75 41.3
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 2.1e-07 58.9 73 39.7
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 3.5e-07 58.2 73 39.7
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 3.5e-07 58.2 80 40.0
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 4.6e-07 57.8 37 54.1
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 4.6e-07 57.8 66 37.9
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.0e-07 57.4 79 36.7
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 6.0e-07 57.4 74 41.9
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 6.0e-07 57.4 83 34.9
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 1.3e-06 56.2 72 43.1
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 1.7e-06 55.8 54 48.1
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.3e-06 55.5 55 45.5
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 2.3e-06 55.5 55 45.5
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.3e-06 55.5 54 50.0
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 3.0e-06 55.1 76 35.5
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 8.6e-06 53.5 81 38.3
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 8.6e-06 53.5 76 42.1
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.6e-06 53.5 77 37.7
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 8.6e-06 53.5 77 37.7
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 8.6e-06 53.5 55 43.6


User provided reference genes

Program Settings