Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 8.6e-225 783.5 440 100.0
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 2.1e-154 549.7 444 71.8
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 8.2e-151 537.7 448 71.2
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 5.3e-150 535.0 443 70.7
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 3.4e-149 532.3 446 69.1
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 3.7e-143 512.3 415 69.2
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 3.1e-142 509.2 424 70.8
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 4.2e-139 498.8 386 74.6
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 1.7e-135 486.9 386 72.0
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 8.2e-135 484.6 509 60.1
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 8.2e-135 484.6 447 66.2
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 2.2e-119 433.3 315 74.9
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 3.8e-116 422.5 467 54.8
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 4.2e-115 419.1 420 59.5
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.6e-114 417.2 453 57.8
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 1.4e-113 414.1 453 56.1
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 3.0e-113 412.9 449 55.0
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.4e-112 409.5 447 56.4
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 4.9e-111 405.6 453 55.0
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 6.3e-111 405.2 453 56.3
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 1.8e-110 403.7 446 55.6
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 4.1e-110 402.5 428 57.2
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 1.2e-109 401.0 424 56.4
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.5e-109 399.4 450 55.1
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 1.3e-108 397.5 438 57.1
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 1.9e-107 393.7 452 55.1
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 4.7e-106 389.0 449 53.5
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 8.0e-106 388.3 284 73.9
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 3.1e-105 386.3 442 55.7
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 2.2e-103 380.2 440 56.6
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 4.1e-102 375.9 448 54.9
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 7.0e-102 375.2 424 57.3
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 4.6e-101 372.5 423 58.2
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.0e-100 371.3 447 51.2
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 8.6e-100 368.2 449 52.3
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.5e-99 367.5 449 52.6
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 5.6e-99 365.5 463 48.4
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.4e-97 360.9 420 54.0
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 4.0e-97 359.4 472 48.9
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.0e-96 357.1 350 58.3
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 2.2e-95 353.6 444 52.9
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 4.9e-95 352.4 445 50.1
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 1.4e-94 350.9 447 52.8
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.7e-93 346.7 412 52.7
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.0e-92 344.7 326 59.5
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 4.3e-91 339.3 454 48.5
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 7.3e-91 338.6 451 51.2
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.2e-90 337.8 411 53.5
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 2.8e-90 336.7 466 45.9
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 6.2e-90 335.5 460 47.2
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 6.2e-90 335.5 464 46.3
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.5e-88 330.9 468 46.6
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.0e-88 330.5 424 51.4
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 4.4e-88 329.3 473 45.2
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 1.7e-87 327.4 445 47.2
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 1.4e-86 324.3 466 46.6
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 5.4e-86 322.4 455 45.9
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 5.4e-86 322.4 479 45.3
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 7.1e-86 322.0 265 66.0
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.1e-85 320.5 456 47.1
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.5e-85 319.7 344 54.1
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 4.6e-85 319.3 302 63.9
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 4.6e-85 319.3 441 49.4
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.9e-84 316.2 442 48.0
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 6.6e-84 315.5 411 49.6
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 6.6e-84 315.5 302 61.3
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 6.6e-84 315.5 436 50.5
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.1e-83 314.7 442 47.5
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.5e-83 314.3 446 47.8
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.5e-83 314.3 440 47.3
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 1.9e-83 313.9 455 45.5
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 5.6e-83 312.4 182 87.4
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.1e-82 310.5 447 46.5
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 3.6e-82 309.7 442 47.5
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 4.7e-82 309.3 423 45.4
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 3.1e-81 306.6 461 43.2
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 4.0e-81 306.2 455 46.2
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.2e-81 305.8 330 54.5
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 5.2e-81 305.8 450 46.0
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 6.4e-79 298.9 407 48.9
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.4e-78 297.7 388 49.0
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 5.4e-78 295.8 432 47.7
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 5.4e-78 295.8 390 49.5
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 1.2e-77 294.7 434 46.1
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.7e-76 290.8 502 41.6
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 2.3e-76 290.4 360 49.2
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 6.6e-76 288.9 360 52.5
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 8.7e-76 288.5 592 35.8
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.1e-75 288.1 353 50.4
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 2.5e-75 287.0 453 43.5
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 3.3e-75 286.6 350 53.1
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 5.6e-75 285.8 317 53.6
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 2.4e-73 280.4 427 44.5
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.9e-70 270.8 235 61.7
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 7.1e-70 268.9 305 52.1
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 7.1e-70 268.9 306 50.7
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 1.0e-68 265.0 245 58.4
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 3.9e-68 263.1 257 57.6
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 3.6e-66 256.5 463 39.7
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 4.8e-66 256.1 240 60.0
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.8e-65 254.2 240 59.2
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 3.4e-64 250.0 312 51.0
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 3.4e-64 250.0 240 59.2
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.3e-63 248.1 283 51.9
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 4.9e-63 246.1 235 57.9
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.4e-62 244.6 441 42.6
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.9e-62 244.2 244 58.6
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 2.4e-62 243.8 242 57.9
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 5.4e-62 242.7 284 52.8
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 6.0e-61 239.2 314 47.8
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 5.1e-60 236.1 284 52.1
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 5.1e-60 236.1 284 52.1
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 2.5e-59 233.8 290 51.4
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.0e-56 224.2 250 51.2
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 2.6e-56 223.8 300 49.0
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.6e-56 222.2 326 46.9
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.6e-53 214.5 311 46.0
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.0e-48 197.6 271 45.8
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 1.7e-47 194.5 226 49.1
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 2.9e-47 193.7 318 42.8
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 2.9e-47 193.7 176 59.1
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.1e-46 191.8 430 38.6
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 6.7e-44 182.6 182 56.6
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 5.7e-43 179.5 421 38.5
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 9.7e-43 178.7 189 55.6
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.8e-41 174.5 221 51.6
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 8.8e-36 155.6 307 37.1
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 2.0e-32 144.4 93 78.5
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 2.6e-32 144.1 112 66.1
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 3.2e-30 137.1 185 46.5
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 4.2e-30 136.7 152 53.3
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 9.4e-30 135.6 105 72.4
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.6e-29 134.8 246 39.0
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 1.6e-29 134.8 113 63.7
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 2.1e-29 134.4 449 30.3
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 6.1e-29 132.9 202 41.1
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 3.9e-28 130.2 206 41.3
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.4e-27 126.7 71 81.7
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.7e-27 126.3 69 84.1
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.7e-26 124.8 71 80.3
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.3e-25 119.8 70 81.4
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.6e-24 118.2 97 59.8
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.0e-23 115.5 97 58.8
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 1.3e-23 115.2 87 57.5
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 2.7e-21 107.5 73 68.5
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 1.4e-20 105.1 260 37.3
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 3.0e-20 104.0 143 45.5
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 3.3e-19 100.5 71 73.2
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.7e-19 99.8 274 35.0
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 9.7e-19 99.0 244 35.7
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.3e-18 98.6 244 35.7
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.3e-18 98.6 244 35.7
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.3e-18 98.6 110 46.4
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.1e-17 95.5 259 34.0
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 1.7e-15 88.2 161 40.4
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.0e-15 86.7 246 34.6
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 1.9e-14 84.7 140 50.0
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.2e-14 84.0 89 51.7
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 2.7e-13 80.9 99 39.4
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.7e-10 71.6 274 27.0
SHI28534 Sapria himalayana HOM05D005377 ORTHO05D003034 1.7e-07 61.6 169 34.9
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.5e-06 58.5 62 53.2
Nn1g05398 Nelumbo nucifera HOM05D067915 ORTHO05D049297 7.2e-06 56.2 150 39.3


User provided reference genes

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