Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 9.7e-107 390.2 201 100.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 5.7e-67 258.1 201 72.1
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 5.7e-67 258.1 197 69.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.8e-66 255.8 197 71.1
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.8e-63 245.4 198 68.2
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 5.5e-62 241.5 198 67.7
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.1e-61 239.6 196 69.4
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 2.8e-61 239.2 200 68.0
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 2.8e-61 239.2 191 68.1
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.8e-61 239.2 196 67.3
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 4.7e-61 238.4 186 70.4
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 8.0e-61 237.7 200 68.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 1.0e-60 237.3 194 67.5
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.0e-60 237.3 177 74.0
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.0e-60 237.3 202 67.3
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.0e-60 237.3 169 73.4
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.0e-60 237.3 169 75.1
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.8e-60 236.5 189 69.3
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.8e-60 236.5 195 67.2
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.3e-60 236.1 201 66.2
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 3.0e-60 235.7 194 66.5
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 4.0e-60 235.3 180 68.3
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 5.2e-60 235.0 197 66.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 5.2e-60 235.0 197 66.0
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.2e-59 233.8 192 67.7
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.5e-59 233.4 200 65.5
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.0e-59 233.0 201 66.2
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 3.4e-59 232.3 198 65.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 5.7e-59 231.5 198 66.2
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 7.5e-59 231.1 198 66.2
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 7.5e-59 231.1 170 72.4
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.7e-58 229.9 171 72.5
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.7e-58 229.9 183 67.2
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.2e-58 229.6 199 64.3
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.8e-58 229.2 171 72.5
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 4.9e-58 228.4 173 69.9
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 6.3e-58 228.0 187 67.9
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.4e-57 226.9 170 69.4
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 2.4e-57 226.1 199 64.3
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.4e-57 224.9 199 61.8
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 5.4e-57 224.9 202 62.4
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 7.0e-57 224.6 177 70.6
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 7.0e-57 224.6 177 70.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 7.0e-57 224.6 199 65.8
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 9.2e-57 224.2 177 70.6
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 9.2e-57 224.2 177 70.6
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.2e-56 223.8 170 70.0
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.6e-56 223.4 198 63.6
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-56 223.4 207 63.3
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.6e-56 223.4 207 63.3
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.6e-56 223.4 203 61.1
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.7e-56 222.6 184 68.5
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.7e-56 222.6 169 68.0
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 2.7e-56 222.6 196 64.3
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.5e-56 222.2 199 61.3
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 4.5e-56 221.9 185 65.9
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.5e-56 221.9 169 68.6
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.9e-56 221.5 164 68.9
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 5.9e-56 221.5 198 62.6
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.9e-56 221.5 184 67.9
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.0e-55 220.7 181 66.9
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.3e-55 220.3 188 63.8
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 2.3e-55 219.5 194 59.8
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 2.3e-55 219.5 180 68.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.8e-55 218.8 197 61.9
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 5.0e-55 218.4 161 72.7
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 5.0e-55 218.4 187 66.3
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 6.6e-55 218.0 202 59.9
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 8.6e-55 217.6 170 65.3
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.1e-54 217.2 195 60.0
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.9e-54 216.5 200 60.0
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.5e-54 216.1 204 59.3
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.5e-54 216.1 184 66.3
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.3e-54 215.7 198 62.6
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 4.3e-54 215.3 197 60.9
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.6e-54 214.9 170 66.5
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 5.6e-54 214.9 186 63.4
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 9.5e-54 214.2 194 58.8
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.8e-53 212.6 169 67.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 3.6e-53 212.2 169 65.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.7e-53 211.8 205 58.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 6.1e-53 211.5 200 58.5
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 6.1e-53 211.5 193 61.1
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 8.0e-53 211.1 199 57.3
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.4e-52 210.3 185 61.6
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 4.0e-52 208.8 199 59.3
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.2e-52 208.4 186 62.4
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 5.2e-52 208.4 167 64.7
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 6.8e-52 208.0 193 57.0
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 6.8e-52 208.0 200 58.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 8.9e-52 207.6 204 57.8
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.2e-51 207.2 182 61.5
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.6e-51 206.1 169 63.9
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.4e-51 205.7 167 62.9
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 3.4e-51 205.7 182 61.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 5.8e-51 204.9 198 58.1
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 7.5e-51 204.5 167 62.9
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 7.5e-51 204.5 171 63.2
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 9.8e-51 204.1 221 56.1
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 9.8e-51 204.1 199 57.3
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.3e-50 203.8 165 65.5
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.9e-50 202.6 169 62.1
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 3.7e-50 202.2 222 54.1
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.7e-50 202.2 228 53.9
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.9e-50 201.8 163 64.4
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.9e-50 201.8 163 64.4
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 8.3e-50 201.1 187 61.5
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 8.3e-50 201.1 205 54.6
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.1e-49 200.7 169 60.9
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.4e-49 200.3 177 61.6
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 5.4e-49 198.4 170 61.8
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.6e-48 196.8 169 61.5
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.3e-47 193.0 169 62.7
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 3.0e-47 192.6 183 58.5
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.6e-47 191.4 144 67.4
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 3.3e-46 189.1 186 57.5
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.3e-46 188.7 155 63.2
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.2e-45 187.2 172 57.6
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.6e-45 185.7 190 53.7
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 3.6e-45 185.7 185 55.1
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.7e-42 176.8 163 60.1
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.4e-41 173.7 170 60.0
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.2e-40 170.6 166 54.2
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.9e-39 165.6 167 52.1
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 5.1e-39 165.2 200 51.5
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.9e-38 163.3 163 52.1
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 2.1e-37 159.8 159 55.3
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.1e-36 157.5 174 52.3
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.6e-35 152.9 215 45.6
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.2e-32 144.1 130 57.7
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.0e-32 141.7 173 43.4
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.8e-32 141.4 169 45.0
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.6e-31 138.3 170 46.5
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.6e-29 133.7 102 68.6
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 4.7e-29 132.1 114 66.7
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.2e-27 127.5 102 63.7
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 5.8e-27 125.2 86 73.3
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 7.6e-27 124.8 98 65.3
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 2.9e-26 122.9 142 48.6
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.1e-25 120.9 84 71.4
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.2e-25 119.0 85 71.8
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.1e-24 116.7 108 58.3
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 7.8e-24 114.8 82 72.0
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 4.3e-22 109.0 102 61.8
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.9e-18 96.3 102 53.9
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 2.1e-16 90.1 73 65.8
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.3e-15 86.7 80 57.5
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.8e-13 79.7 138 41.3
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 6.2e-13 78.6 74 55.4
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 9.0e-12 74.7 63 66.7
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 9.0e-12 74.7 125 34.4
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.6e-08 62.4 43 76.7
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.3e-07 60.1 97 42.3
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 6.7e-07 58.5 41 70.7
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 9.6e-06 54.7 49 61.2


User provided reference genes

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