Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 3291.9 1700 100.0
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2704.1 1703 82.8
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2683.3 1704 81.1
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2663.3 1707 80.7
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2625.9 1738 77.2
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2529.6 1773 75.0
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2499.2 1412 86.7
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2477.2 1685 75.1
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2411.3 1710 73.4
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2408.6 1727 72.1
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2407.5 1717 71.9
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2402.5 1707 72.6
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2396.3 1712 72.3
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2395.9 1718 72.3
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2380.1 1716 71.9
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2379.7 1719 72.0
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2371.7 1727 71.8
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2365.9 1718 71.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2364.3 1714 71.2
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2360.5 1694 71.3
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2360.1 1730 70.9
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2346.6 1718 71.1
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2342.8 1718 71.4
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2340.8 1718 70.3
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2339.3 1716 70.0
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2335.5 1707 70.3
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2329.7 1712 69.6
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2325.8 1290 86.4
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2313.9 1719 69.5
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2312.3 1708 70.0
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2312.0 1717 69.2
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2306.9 1730 69.5
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2306.9 1726 69.1
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2301.9 1706 70.0
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2300.8 1723 69.6
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2300.8 1707 69.9
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2296.2 1717 69.1
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2291.2 1294 84.8
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2290.8 1707 69.9
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2284.2 1705 68.4
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2280.4 1716 69.0
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2278.4 1722 68.5
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2270.7 1721 67.5
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2257.6 1718 67.9
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2251.1 1694 69.5
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2230.3 1760 68.2
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2211.4 1718 66.2
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2208.3 1723 65.5
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2198.7 1729 65.8
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2195.2 1711 66.0
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2192.9 1796 65.6
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2192.2 1716 65.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2189.1 1696 66.0
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2186.4 1716 65.3
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2178.3 1711 66.0
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2167.9 1714 65.5
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2165.2 1713 66.9
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2161.0 1725 64.9
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2160.2 1763 64.4
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2149.8 1867 62.2
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2147.1 1699 64.7
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2145.9 1720 64.3
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2142.5 1699 65.2
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2141.3 1715 65.3
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2138.2 1712 64.4
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2134.0 1712 65.2
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2132.5 1717 64.6
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2132.5 1710 64.0
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2131.3 1722 64.5
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2130.5 1714 64.5
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2127.4 1721 64.6
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2122.8 1715 64.1
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2113.2 1710 64.6
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2111.6 1707 64.4
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2108.6 1729 63.7
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2100.5 1685 63.9
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2098.6 1736 62.9
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2048.5 1706 62.1
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2040.8 1734 62.0
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2040.8 1681 63.1
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1999.2 1617 63.8
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1996.1 2128 53.2
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1980.7 1706 60.5
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1976.4 1710 60.4
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1942.2 1713 61.0
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1909.4 1701 58.6
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1890.2 1159 78.3
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1883.2 1043 87.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1879.4 1457 66.2
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1876.7 1713 57.6
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1843.9 1653 59.4
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1805.0 1795 55.7
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1692.9 1734 56.7
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1679.1 1645 53.2
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1670.6 1451 62.3
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1657.1 1682 51.2
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1647.5 1682 52.6
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1634.8 1729 50.5
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1622.4 1107 79.0
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1601.3 1649 51.2
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1476.1 936 74.0
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1455.7 1084 64.1
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1416.4 1137 66.5
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1332.4 1364 55.4
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1310.0 1153 63.4
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1122.5 910 61.5
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1091.3 917 65.4
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 7.4e-309 1064.7 600 84.7
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 5.2e-286 988.8 742 65.0
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 5.0e-281 972.2 616 75.6
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.4e-259 899.0 682 61.4
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.0e-241 841.6 551 73.3
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.9e-240 837.4 794 59.7
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 2.0e-213 747.7 1579 34.5
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 9.7e-200 702.2 847 42.0
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 4.0e-193 680.2 587 71.0
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 5.0e-180 636.7 427 71.4
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.2e-154 552.4 376 70.7
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.2e-154 552.4 329 80.2
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.5e-139 502.3 888 36.5
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 3.1e-121 441.4 625 51.5
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.2e-117 429.5 694 38.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.1e-110 406.4 437 45.3
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.2e-109 402.9 240 78.3
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 2.5e-107 395.2 336 62.8
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 8.2e-106 390.2 377 66.6
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 3.8e-103 381.3 525 53.5
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 6.5e-103 380.6 246 70.7
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.3e-92 345.5 216 70.8
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.7e-79 302.8 175 78.9
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.0e-76 293.5 202 73.3
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 9.1e-73 280.4 425 52.5
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.2e-70 271.6 177 67.8
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 2.0e-59 236.1 153 70.6
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 4.1e-49 201.8 208 44.2
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.6e-45 188.7 115 77.4
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 4.0e-44 185.3 129 63.6
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 1.2e-40 173.7 99 85.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.2e-37 163.7 131 55.7
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 3.4e-35 155.6 169 48.5
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 2.5e-30 139.4 205 42.0
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 6.2e-29 134.8 94 71.3
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.1e-28 134.0 123 52.8
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 4.1e-25 122.1 73 82.2
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.2e-24 120.6 83 68.7
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 6.0e-24 118.2 104 54.8
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 6.0e-24 118.2 61 85.2
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.3e-23 117.1 63 90.5
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 5.1e-23 115.2 224 41.1
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 6.6e-23 114.8 88 62.5
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 3.6e-21 109.0 215 34.4
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 8.1e-21 107.8 75 76.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.4e-17 97.1 57 84.2
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 2.4e-17 96.3 177 47.5
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 4.6e-16 92.0 76 56.6
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.0e-15 90.9 163 36.2
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.7e-15 90.1 94 53.2
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.1e-14 87.4 51 72.5
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 7.3e-14 84.7 58 65.5
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.1e-12 80.9 50 80.0
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 2.4e-12 79.7 43 76.7
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 6.9e-12 78.2 52 73.1
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.9e-10 72.8 133 35.3
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.4e-09 70.5 106 40.6
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 3.2e-09 69.3 56 57.1
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 4.2e-09 68.9 44 77.3
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 4.2e-09 68.9 104 41.3
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.6e-08 67.0 280 36.1
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 1.0e-07 64.3 165 28.5
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 4.3e-06 58.9 68 44.1
PSO063G5797 Papaver somniferum HOM05D001950 ORTHO05D001926 9.6e-06 57.8 132 28.8


User provided reference genes

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