Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-180 636.3 313 100.0
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 9.3e-157 557.0 331 84.3
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.3e-147 526.6 310 86.5
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.3e-147 526.6 310 86.5
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.6e-132 476.5 331 72.5
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 2.2e-129 466.1 329 70.2
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 6.3e-129 464.5 325 70.5
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.4e-128 463.4 332 69.3
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 4.5e-127 458.4 332 70.8
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.7e-126 456.4 330 71.2
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 3.8e-126 455.3 329 70.2
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 2.0e-122 443.0 330 69.1
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 5.3e-120 434.9 331 68.6
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.4e-117 426.8 330 66.4
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.4e-117 426.8 330 66.4
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.8e-99 366.7 317 59.9
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 3.7e-97 359.0 313 58.8
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 2.0e-95 353.2 318 57.5
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.7e-94 350.1 330 56.1
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 8.6e-94 347.8 317 55.5
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.1e-93 347.4 305 56.7
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 5.5e-93 345.1 270 62.2
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 5.5e-93 345.1 311 55.9
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 7.2e-93 344.7 342 53.8
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.2e-92 344.0 300 59.0
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 3.6e-92 342.4 312 55.4
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 6.8e-91 338.2 312 54.8
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.2e-90 337.4 354 52.3
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 2.0e-90 336.7 301 58.1
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.3e-89 334.0 265 61.1
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 3.7e-89 332.4 315 57.1
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 6.3e-89 331.6 309 55.7
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 8.3e-89 331.3 316 53.8
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.1e-88 328.9 317 56.2
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.1e-88 328.9 315 56.8
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 3.5e-87 325.9 312 53.8
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 4.5e-87 325.5 269 59.9
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 7.8e-87 324.7 317 55.5
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 2.9e-86 322.8 267 58.8
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 3.8e-86 322.4 311 52.4
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 8.6e-86 321.2 304 53.9
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.9e-85 320.1 269 56.5
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.3e-85 319.3 304 56.2
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 4.3e-85 318.9 320 50.6
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.6e-84 317.0 269 56.9
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 2.8e-84 316.2 307 54.4
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.0e-83 314.3 304 53.0
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 5.2e-83 312.0 312 51.0
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 8.9e-83 311.2 304 52.3
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 2.6e-82 309.7 272 57.0
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 4.4e-82 308.9 311 54.3
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 9.8e-82 307.8 319 49.2
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.3e-81 307.4 278 56.8
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 1.7e-81 307.0 313 52.4
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 6.4e-81 305.1 311 51.1
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.1e-80 304.3 251 61.8
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 4.1e-80 302.4 319 48.9
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 7.0e-80 301.6 268 55.2
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 4.6e-79 298.9 275 54.5
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 7.8e-79 298.1 272 55.9
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 1.7e-78 297.0 279 54.8
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 3.0e-78 296.2 319 50.2
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 3.9e-78 295.8 270 55.2
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.6e-77 292.0 271 53.9
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 8.0e-76 288.1 224 60.7
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.4e-75 287.3 306 51.0
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 4.0e-75 285.8 307 48.9
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.2e-75 285.4 316 49.4
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 7.5e-74 281.6 283 51.6
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.7e-73 280.4 264 54.2
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 2.2e-73 280.0 294 50.0
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 2.2e-73 280.0 294 50.0
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 4.9e-73 278.9 372 44.6
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 6.4e-73 278.5 294 49.3
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.1e-72 277.7 286 50.3
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.1e-72 277.7 227 59.0
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.4e-72 277.3 294 49.3
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 2.4e-72 276.6 270 54.4
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 3.2e-72 276.2 286 50.0
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 5.4e-72 275.4 256 53.9
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.6e-71 273.9 294 49.3
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 2.7e-71 273.1 262 54.6
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 3.5e-71 272.7 258 53.1
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 3.5e-71 272.7 274 53.6
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.0e-70 271.2 288 49.7
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.0e-70 271.2 307 48.5
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 3.9e-70 269.2 294 48.0
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 3.3e-69 266.2 213 63.4
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.3e-69 265.8 256 53.1
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 1.2e-68 264.2 255 54.1
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 2.1e-68 263.5 225 56.4
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 4.7e-68 262.3 271 50.9
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 2.3e-67 260.0 228 53.9
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 6.8e-67 258.5 303 47.2
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.2e-66 257.7 265 49.4
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 2.0e-66 256.9 266 47.7
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.8e-66 255.4 231 54.5
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 9.9e-66 254.6 266 49.2
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.4e-64 250.8 267 50.9
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 1.9e-64 250.4 266 50.0
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 2.4e-64 250.0 317 46.7
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 7.1e-64 248.4 242 55.0
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.0e-62 244.6 295 48.5
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.3e-61 239.2 226 55.3
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 3.6e-60 236.1 302 45.7
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.8e-59 231.9 271 45.4
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.5e-58 230.7 293 46.8
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 7.1e-56 221.9 213 52.6
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 7.1e-56 221.9 294 44.6
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 2.1e-55 220.3 273 44.0
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-54 217.6 275 45.5
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.9e-53 213.8 271 42.8
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.3e-53 213.0 203 54.2
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 4.7e-52 209.1 213 48.8
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.7e-49 200.7 263 43.3
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.1e-48 198.0 188 51.1
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.4e-48 195.7 176 56.8
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 1.6e-47 194.1 155 64.5
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 5.1e-46 189.1 173 54.3
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 9.6e-45 184.9 264 38.6
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 2.1e-44 183.7 128 69.5
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 3.1e-43 179.9 160 58.1
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 3.1e-43 179.9 283 36.4
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 4.5e-42 176.0 295 39.0
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 3.8e-41 172.9 289 39.1
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.1e-40 171.4 119 71.4
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.6e-39 167.5 165 52.7
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.5e-39 166.4 282 37.2
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 5.1e-38 162.5 283 35.7
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 8.1e-36 155.2 225 43.1
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 6.4e-33 145.6 253 38.3
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 8.4e-33 145.2 116 61.2
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 6.0e-31 139.0 215 43.3
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 2.0e-26 124.0 135 48.1
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 2.2e-20 104.0 183 35.0
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 3.1e-19 100.1 87 52.9
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 1.2e-18 98.2 112 46.4
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 6.1e-15 85.9 102 48.0
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.3e-14 84.0 110 44.5
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 1.2e-10 71.6 165 30.3
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 2.6e-10 70.5 202 27.7
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 3.8e-09 66.6 61 54.1
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 3.8e-09 66.6 61 54.1
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.5e-09 65.5 86 39.5
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 5.5e-08 62.8 222 26.6
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 5.5e-08 62.8 64 51.6
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 9.4e-08 62.0 169 30.2
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 6.1e-07 59.3 159 27.7
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 5.1e-06 56.2 167 25.1
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 8.8e-06 55.5 140 28.6


User provided reference genes

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