Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 2.5e-125 452.2 242 100.0
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 2.5e-85 319.3 230 75.7
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 8.1e-84 314.3 231 74.0
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 6.9e-83 311.2 214 77.1
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 9.3e-80 300.8 231 70.6
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 4.2e-72 275.4 256 62.1
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 7.1e-72 274.6 245 64.1
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 3.0e-62 242.7 181 71.8
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 5.7e-61 238.4 230 57.8
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 6.2e-60 235.0 190 66.8
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 1.0e-54 217.6 233 54.5
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 3.0e-54 216.1 228 54.8
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 5.1e-54 215.3 229 51.1
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.1e-53 214.2 235 50.6
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 1.9e-53 213.4 226 54.0
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 1.9e-53 213.4 233 52.8
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 5.7e-53 211.8 231 52.8
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 9.7e-53 211.1 235 50.2
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 1.4e-51 207.2 239 49.8
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 1.8e-51 206.8 240 50.8
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.1e-51 206.1 238 49.6
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 6.9e-51 204.9 238 49.6
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 1.2e-50 204.1 226 49.1
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 1.2e-50 204.1 132 82.6
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 2.6e-50 203.0 230 51.3
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 2.2e-49 199.9 236 48.3
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 1.9e-48 196.8 239 50.2
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 2.5e-48 196.4 235 48.9
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 2.5e-48 196.4 226 50.4
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 9.4e-48 194.5 193 53.9
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 2.7e-47 193.0 228 48.2
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 6.7e-46 188.3 225 48.9
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 1.1e-45 187.6 135 74.8
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 3.3e-45 186.0 238 45.0
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 2.2e-44 183.3 185 55.1
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 1.4e-43 180.6 230 46.1
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 1.4e-43 180.6 233 46.8
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 3.1e-43 179.5 182 53.3
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 4.1e-43 179.1 232 47.8
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 4.1e-43 179.1 228 48.2
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 9.1e-43 177.9 297 40.7
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.5e-42 177.2 210 48.1
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 2.6e-42 176.4 207 52.7
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 1.3e-41 174.1 224 48.2
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 2.2e-41 173.3 231 45.9
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 2.9e-41 172.9 222 47.7
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 8.5e-41 171.4 224 46.9
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 7.2e-40 168.3 224 47.3
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 9.4e-40 167.9 187 49.2
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.2e-39 167.5 231 45.0
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 1.6e-39 167.2 228 46.9
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.1e-39 166.8 215 47.4
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 6.1e-39 165.2 230 44.8
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 1.8e-38 163.7 227 43.6
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 2.6e-37 159.8 235 42.1
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 4.4e-37 159.1 222 43.7
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 1.3e-36 157.5 165 53.9
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 3.7e-36 156.0 231 41.6
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 4.8e-36 155.6 225 43.6
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.4e-35 154.1 187 49.7
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 1.4e-35 154.1 231 41.6
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 1.4e-35 154.1 242 40.9
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.8e-35 153.7 291 37.1
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 5.3e-35 152.1 228 43.4
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 7.0e-35 151.8 229 40.2
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 4.5e-34 149.1 272 39.7
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 4.5e-34 149.1 227 43.2
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 4.5e-34 149.1 231 42.0
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 5.9e-34 148.7 237 41.4
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 5.0e-33 145.6 178 47.2
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 5.0e-33 145.6 336 33.3
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 6.5e-33 145.2 225 42.2
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 1.5e-32 144.1 234 41.0
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 7.2e-32 141.7 225 41.3
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 1.6e-31 140.6 225 38.2
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 1.6e-31 140.6 225 37.3
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 1.6e-31 140.6 225 40.9
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 2.7e-31 139.8 194 42.8
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 3.6e-31 139.4 225 40.4
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 6.3e-28 128.6 241 37.8
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 6.3e-28 128.6 249 36.9
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 9.1e-27 124.8 295 34.2
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 2.0e-26 123.6 251 36.3
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 2.7e-26 123.2 181 43.1
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 7.7e-26 121.7 117 53.0
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 1.0e-25 121.3 236 38.1
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 5.0e-25 119.0 224 36.6
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 6.5e-25 118.6 225 39.1
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 7.2e-24 115.2 241 37.8
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 1.2e-23 114.4 311 33.8
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 2.1e-23 113.6 171 44.4
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 1.0e-22 111.3 179 39.7
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 2.3e-22 110.2 192 42.7
Ca_05090_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 1.5e-21 107.5 86 67.4
Ca_14995_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 1.5e-21 107.5 86 67.4
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 1.4e-19 100.9 136 44.1
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 4.1e-19 99.4 228 34.6
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 3.5e-18 96.3 123 43.1
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 1.0e-17 94.7 183 34.4
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.0e-17 94.7 123 42.3
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 1.0e-17 94.7 231 32.0
TPR.G22099 Trifolium pratense HOM05D007204 ORTHO05D008593 1.5e-16 90.9 146 45.2
Lalb_Chr15g0083181 Lupinus albus HOM05D007204 ORTHO05D008593 5.2e-14 82.4 58 72.4
TPR.G444 Trifolium pratense HOM05D007204 ORTHO05D008593 4.4e-13 79.3 49 79.6
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 1.7e-12 77.4 134 39.6


User provided reference genes

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