Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0005213 Lotus japonicus HOM05D002352 ORTHO05D003724 6.7e-151 537.3 277 100.0
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 3.3e-113 412.1 273 81.7
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.9e-108 396.4 273 77.3
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 6.0e-107 391.3 273 75.1
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 6.0e-107 391.3 273 76.2
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 7.8e-107 391.0 273 75.8
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 2.3e-106 389.4 273 76.2
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 5.1e-106 388.3 273 75.1
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 4.3e-105 385.2 273 75.1
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 2.1e-104 382.9 273 75.1
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 3.6e-104 382.1 273 73.6
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 3.6e-104 382.1 273 74.4
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 8.1e-104 380.9 273 74.7
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.1e-103 380.6 273 73.6
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.4e-103 380.2 273 74.0
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 8.9e-103 377.5 273 71.8
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 2.6e-102 375.9 273 72.9
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 5.8e-102 374.8 273 71.8
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 5.8e-102 374.8 273 70.7
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 7.6e-102 374.4 273 72.5
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 7.6e-102 374.4 273 70.7
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 7.6e-102 374.4 273 70.7
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 9.9e-102 374.0 273 71.1
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 2.2e-101 372.9 273 71.8
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 3.7e-101 372.1 273 71.4
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 6.4e-101 371.3 273 71.1
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 8.4e-101 370.9 273 71.8
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.1e-100 370.5 273 71.4
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 2.4e-100 369.4 273 71.4
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.2e-99 367.1 273 70.3
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.2e-99 367.1 273 70.0
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 2.1e-99 366.3 273 70.7
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.7e-99 365.9 273 69.2
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 4.6e-99 365.2 273 71.1
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.0e-98 364.0 273 69.2
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 1.0e-98 364.0 273 70.3
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 2.3e-98 362.8 273 70.7
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 2.3e-98 362.8 273 70.0
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 2.3e-98 362.8 273 70.0
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 3.0e-98 362.5 273 69.2
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 6.6e-98 361.3 273 70.3
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 8.6e-98 360.9 273 69.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 8.6e-98 360.9 273 69.6
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.5e-97 360.1 273 68.9
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.9e-97 359.8 273 68.9
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 2.5e-97 359.4 273 69.2
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 3.3e-97 359.0 273 68.5
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 4.3e-97 358.6 273 67.8
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 7.3e-97 357.8 273 69.2
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.3e-97 357.8 273 69.6
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.3e-97 357.8 273 69.6
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 9.6e-97 357.5 273 70.0
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.2e-96 357.1 272 69.9
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.1e-96 356.3 273 69.6
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 2.1e-96 356.3 272 69.1
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 3.6e-96 355.5 273 67.8
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 4.7e-96 355.1 273 68.9
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 6.2e-96 354.8 273 68.5
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 6.2e-96 354.8 299 63.9
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 6.2e-96 354.8 273 67.0
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 8.1e-96 354.4 273 68.1
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.1e-95 354.0 273 67.4
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 1.4e-95 353.6 273 67.8
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.4e-95 353.6 273 68.1
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.8e-95 353.2 273 68.1
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 5.2e-95 351.7 273 68.5
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 6.8e-95 351.3 273 67.4
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 6.8e-95 351.3 279 65.2
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 6.8e-95 351.3 273 67.8
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 6.8e-95 351.3 273 67.8
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 8.9e-95 350.9 273 67.0
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.2e-94 350.5 273 67.0
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 1.5e-94 350.1 273 66.3
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 2.6e-94 349.4 272 69.5
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 2.6e-94 349.4 273 66.7
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 3.4e-94 349.0 273 66.3
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 5.8e-94 348.2 272 68.8
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 5.8e-94 348.2 273 66.3
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 7.6e-94 347.8 272 69.1
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 7.6e-94 347.8 273 66.7
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.3e-93 347.1 273 67.8
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 2.2e-93 346.3 273 66.3
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.9e-93 345.9 273 66.3
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.9e-93 345.9 273 66.3
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 3.8e-93 345.5 273 68.9
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.8e-93 345.5 272 67.3
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 6.4e-93 344.7 273 66.7
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 6.4e-93 344.7 273 66.3
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 6.4e-93 344.7 273 66.3
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 8.4e-93 344.4 281 68.0
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 2.4e-92 342.8 273 68.1
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 2.4e-92 342.8 273 68.1
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 2.4e-92 342.8 273 68.1
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 2.4e-92 342.8 273 68.1
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 2.4e-92 342.8 273 68.1
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 3.2e-92 342.4 273 65.9
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.2e-92 342.0 273 65.2
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.2e-92 342.0 273 65.2
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 7.1e-92 341.3 273 67.8
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.2e-91 340.5 273 67.8
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.1e-91 339.7 273 67.4
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 2.1e-91 339.7 273 67.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 2.7e-91 339.3 274 66.1
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 6.0e-91 338.2 273 64.5
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 6.0e-91 338.2 273 65.9
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 7.8e-91 337.8 273 64.1
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.0e-90 337.4 273 66.3
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 1.0e-90 337.4 273 64.8
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.0e-90 337.4 274 63.5
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.3e-90 337.0 273 67.4
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.3e-90 337.0 273 67.4
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 3.9e-90 335.5 273 66.7
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 3.9e-90 335.5 273 66.7
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 3.9e-90 335.5 273 66.7
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 3.9e-90 335.5 273 66.7
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 3.9e-90 335.5 273 66.7
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 8.7e-90 334.3 272 66.2
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 6.9e-87 324.7 271 67.2
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 6.9e-87 324.7 273 60.8
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.7e-85 320.1 273 59.7
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 1.3e-82 310.5 274 60.6
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 8.7e-82 307.8 270 60.4
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 3.6e-80 302.4 273 56.8
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 3.4e-78 295.8 270 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.2e-75 287.3 273 53.8
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.7e-72 275.8 273 53.5
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 4.8e-72 275.4 273 53.5
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.5e-70 270.4 265 55.8
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 6.7e-66 255.0 189 69.3
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 9.0e-63 244.6 273 47.6
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 5.7e-57 225.3 275 44.7
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 2.8e-56 223.0 232 54.7
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 6.1e-43 178.7 199 52.3
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 5.2e-42 175.6 154 60.4
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 4.1e-39 166.0 272 37.1
TPR.G28588 Trifolium pratense HOM05D002352 ORTHO05D014906 7.7e-38 161.8 191 56.0
arahy.Tifrunner.gnm1.ann1.KL0F8I Arachis hypogaea HOM05D002352 ORTHO05D014906 1.1e-36 157.9 156 59.6
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 6.3e-32 142.1 104 69.2
arahy.Tifrunner.gnm1.ann1.14M6HG Arachis hypogaea HOM05D002352 ORTHO05D000032 3.1e-31 139.8 170 52.4
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 9.1e-31 138.3 178 47.2
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.9e-29 133.3 98 69.4
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 8.5e-29 131.7 310 31.9
TPR.G10987 Trifolium pratense HOM05D002352 ORTHO05D014906 1.3e-24 117.9 88 69.3
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.8e-23 114.0 155 47.1
TPR.G40013 Trifolium pratense HOM05D002352 ORTHO05D014906 7.0e-23 112.1 88 68.2
arahy.Tifrunner.gnm1.ann1.52CC3C Arachis hypogaea HOM05D002352 ORTHO05D014906 2.9e-21 106.7 106 57.5
TPR.G28591 Trifolium pratense HOM05D002352 ORTHO05D014906 5.0e-21 105.9 101 62.4
SHI23479 Sapria himalayana HOM05D002352 ORTHO05D014906 9.5e-20 101.7 74 68.9
AL8G20640 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 1.4e-18 97.8 118 46.6
Actinidia39445 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.0e-17 94.0 74 67.6
TPR.G13263 Trifolium pratense HOM05D002352 ORTHO05D014906 2.6e-17 93.6 86 61.6
arahy.Tifrunner.gnm1.ann1.TCII1L Arachis hypogaea HOM05D002352 ORTHO05D000332 4.9e-16 89.4 170 40.0
TPR.G113 Trifolium pratense HOM05D002352 ORTHO05D014906 8.0e-11 72.0 94 46.8
PRCOL_00006063 Prasinoderma coloniale HOM05D002352 ORTHO05D003724 3.0e-10 70.1 255 26.3
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 3.0e-10 70.1 51 64.7
TAR636G1029 Trochodendron aralioides HOM05D002352 ORTHO05D002410 1.5e-09 67.8 45 71.1
MD07G1271500 Malus domestica HOM05D002352 ORTHO05D014906 6.4e-08 62.4 32 84.4
Carub.0002s1370 Capsella rubella HOM05D002352 ORTHO05D014906 7.0e-07 58.9 88 45.5


User provided reference genes

Program Settings