Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 7.9e-167 590.9 425 100.0
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 2.0e-114 416.8 416 81.2
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 1.5e-109 400.6 416 65.1
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 2.7e-106 389.8 416 78.8
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 2.9e-68 263.5 415 54.0
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 3.2e-67 260.0 345 52.8
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 4.6e-66 256.1 341 62.8
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 3.6e-63 246.5 341 61.0
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 1.2e-58 231.5 345 56.5
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 3.5e-58 229.9 346 61.0
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 2.5e-56 223.8 414 38.6
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 3.3e-56 223.4 345 55.7
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 5.6e-56 222.6 345 58.8
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 3.3e-48 196.8 414 46.6
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 1.6e-47 194.5 364 51.6
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 1.6e-47 194.5 414 42.5
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 2.1e-47 194.1 414 55.1
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 6.9e-46 189.1 364 52.2
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 9.0e-46 188.7 356 50.6
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 2.2e-44 184.1 364 51.9
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 3.2e-43 180.3 346 54.0
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 9.3e-43 178.7 360 51.9
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 4.6e-42 176.4 362 49.7
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 4.6e-42 176.4 360 51.7
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 6.1e-42 176.0 360 51.9
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.1e-40 171.8 414 38.2
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 3.1e-38 163.7 341 50.4
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 1.2e-37 161.8 346 53.5
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 4.5e-37 159.8 347 48.7
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 1.0e-36 158.7 341 51.6
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 1.3e-36 158.3 345 49.0
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 6.5e-36 156.0 345 48.1
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 2.5e-35 154.1 351 51.6
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 3.2e-35 153.7 361 49.6
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 4.2e-35 153.3 341 52.5
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 1.2e-34 151.8 349 50.7
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.2e-34 151.8 361 49.3
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 2.7e-34 150.6 347 50.1
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 2.7e-34 150.6 348 47.7
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 3.6e-34 150.2 346 48.6
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 6.1e-34 149.4 345 49.3
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.4e-33 148.3 348 50.0
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 1.4e-33 148.3 344 50.0
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 1.4e-33 148.3 344 50.0
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 1.8e-33 147.9 347 49.6
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 1.8e-33 147.9 358 48.0
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 2.3e-33 147.5 409 44.5
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 3.9e-33 146.7 344 51.7
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 3.9e-33 146.7 346 49.7
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 6.7e-33 146.0 340 49.7
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 8.8e-33 145.6 349 49.9
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 8.8e-33 145.6 415 49.2
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 8.8e-33 145.6 246 64.2
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 8.8e-33 145.6 348 49.7
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 2.0e-32 144.4 343 49.6
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 2.5e-32 144.1 344 46.2
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 4.3e-32 143.3 348 47.4
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 4.3e-32 143.3 340 50.0
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 2.8e-31 140.6 366 45.1
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 3.7e-31 140.2 345 45.5
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 6.3e-31 139.4 349 50.1
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 8.2e-31 139.0 344 48.8
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 5.3e-30 136.3 364 47.0
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 6.9e-30 136.0 346 48.6
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 6.9e-30 136.0 344 48.3
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 9.1e-30 135.6 203 36.9
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 1.5e-29 134.8 348 49.1
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 4.5e-29 133.3 348 48.9
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 6.5e-28 129.4 348 48.6
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 4.2e-27 126.7 341 47.8
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 2.7e-26 124.0 361 29.9
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.4e-25 121.7 341 47.2
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 6.7e-25 119.4 173 39.3
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 5.7e-24 116.3 316 51.3
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 1.4e-22 111.7 342 43.9
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 8.5e-20 102.4 209 32.1
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 2.5e-19 100.9 343 42.9
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 5.2e-17 93.2 87 59.8
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 4.8e-15 86.7 139 41.0
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 5.0e-12 76.6 362 40.9


User provided reference genes

Program Settings