Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.6e-106 389.4 193 100.0
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.3e-87 326.6 189 84.1
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.6e-87 326.2 187 85.0
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 6.2e-87 324.3 192 80.2
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.2e-85 320.1 188 80.9
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 4.2e-83 311.6 183 82.5
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 4.2e-83 311.6 188 78.7
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 7.1e-83 310.8 183 82.5
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.6e-82 309.7 187 82.4
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.1e-78 295.0 182 77.5
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.6e-77 292.4 183 76.5
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 7.7e-77 290.8 182 76.4
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.9e-76 288.9 182 75.8
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.9e-76 288.9 182 75.8
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 5.0e-76 288.1 182 75.8
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 5.0e-76 288.1 189 77.8
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.4e-75 286.6 183 75.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 4.2e-75 285.0 172 79.7
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.6e-74 283.1 184 74.5
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 4.6e-74 281.6 183 73.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.6e-74 281.6 183 74.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.3e-73 279.3 182 75.8
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.0e-73 278.9 182 74.2
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 3.0e-73 278.9 182 75.8
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.5e-72 276.6 173 75.7
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.5e-72 276.6 183 75.4
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.7e-72 274.6 182 70.9
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 9.7e-72 273.9 183 72.7
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 9.7e-72 273.9 172 77.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 2.2e-71 272.7 184 70.1
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.8e-71 272.3 184 71.2
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.7e-71 271.9 182 72.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 3.7e-71 271.9 183 72.1
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 4.8e-71 271.6 182 71.4
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 4.8e-71 271.6 169 77.5
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 4.8e-71 271.6 173 75.7
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 6.3e-71 271.2 182 72.0
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.1e-70 270.4 184 71.2
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.4e-70 269.2 171 74.3
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.4e-70 269.2 171 74.3
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.1e-70 268.9 182 69.8
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 4.1e-70 268.5 183 71.0
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 4.1e-70 268.5 184 69.6
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 9.1e-70 267.3 189 68.8
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.2e-69 266.9 173 72.8
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 2.0e-69 266.2 184 68.5
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.0e-69 266.2 184 68.5
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 2.0e-69 266.2 184 72.8
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.0e-69 266.2 182 72.0
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.0e-69 266.2 176 72.7
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.6e-69 265.8 184 68.5
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.6e-69 265.8 184 68.5
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 5.9e-69 264.6 182 70.3
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.7e-68 263.1 171 73.1
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.5e-68 261.2 183 71.0
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.9e-67 259.6 172 74.4
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.9e-67 259.6 179 71.5
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 5.5e-67 258.1 182 68.7
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 5.5e-67 258.1 170 73.5
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 7.2e-67 257.7 170 72.9
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 7.2e-67 257.7 182 69.8
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 9.4e-67 257.3 170 73.5
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.2e-66 256.9 170 73.5
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.2e-66 256.9 170 73.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.2e-66 256.9 182 68.7
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.6e-66 256.5 170 73.5
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.1e-66 256.1 182 68.7
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.1e-66 256.1 182 68.7
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.7e-66 255.8 170 72.9
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.1e-66 254.6 173 71.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.0e-65 253.8 182 67.6
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.0e-65 253.8 158 76.6
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.4e-65 253.4 169 74.0
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.3e-65 252.7 168 71.4
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.3e-65 252.7 169 73.4
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 8.8e-65 250.8 168 73.8
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 8.8e-65 250.8 170 70.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.1e-64 250.4 170 72.4
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.5e-64 250.0 182 67.0
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.0e-64 249.6 182 65.4
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.3e-64 248.8 178 68.0
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 5.7e-64 248.1 170 70.6
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.7e-64 248.1 162 72.8
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 9.7e-64 247.3 172 68.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 9.7e-64 247.3 169 66.9
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.3e-63 246.9 174 68.4
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.7e-63 246.5 172 69.2
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.7e-63 246.5 169 70.4
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 2.8e-63 245.7 170 68.2
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.8e-63 245.7 178 67.4
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 4.8e-63 245.0 169 72.8
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 8.2e-63 244.2 170 70.0
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 8.2e-63 244.2 165 70.3
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.1e-62 243.8 183 62.3
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.4e-62 243.4 178 66.9
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.1e-62 242.3 166 70.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 5.3e-62 241.5 164 71.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 5.3e-62 241.5 170 68.8
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 9.1e-62 240.7 170 67.6
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 4.5e-61 238.4 171 67.8
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 5.9e-61 238.0 170 67.6
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 7.7e-61 237.7 170 66.5
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.0e-60 237.3 170 70.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-60 236.9 173 68.2
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-60 236.9 173 68.2
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.7e-60 236.5 170 65.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.7e-60 236.5 170 67.1
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.2e-60 236.1 176 66.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.9e-60 235.7 179 68.7
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 6.5e-60 234.6 167 67.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 6.5e-60 234.6 164 71.3
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.1e-59 233.8 159 72.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.5e-59 233.4 168 66.7
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.2e-59 232.3 170 67.1
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.2e-59 232.3 167 67.1
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.2e-59 232.3 173 66.5
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.2e-59 231.9 173 68.8
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 3.6e-58 228.8 166 68.1
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 4.7e-58 228.4 169 66.3
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.0e-57 227.3 170 64.1
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.3e-57 226.1 156 70.5
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 8.8e-57 224.2 170 65.3
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.1e-56 223.8 165 65.5
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.7e-55 219.9 164 65.2
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.8e-55 219.2 167 67.1
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.8e-55 219.2 167 67.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.8e-55 219.2 158 65.2
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.8e-55 218.4 164 64.6
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 6.3e-55 218.0 165 66.1
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.3e-55 218.0 158 68.4
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.2e-55 217.6 160 68.8
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.1e-54 215.3 160 68.1
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.3e-54 214.9 157 66.2
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.3e-54 214.9 170 61.8
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 9.1e-54 214.2 133 74.4
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.9e-52 209.1 161 60.2
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.0e-52 208.4 179 58.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.0e-52 208.4 172 61.6
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-51 207.2 174 62.6
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.4e-51 204.1 151 64.9
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.6e-50 203.4 131 71.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.1e-50 201.4 159 61.0
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.0e-49 200.7 170 60.0
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.0e-49 199.1 165 60.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 3.0e-49 199.1 182 56.0
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 8.8e-49 197.6 159 61.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.6e-48 196.1 159 57.2
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 5.7e-48 194.9 161 62.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.3e-47 191.4 164 55.5
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.9e-45 184.9 134 70.1
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.0e-44 184.1 138 67.4
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 6.5e-44 181.4 156 59.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 8.5e-44 181.0 130 70.8
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.6e-42 176.8 128 69.5
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.4e-41 173.7 163 55.2
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.0e-40 169.9 124 66.1
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 3.4e-40 169.1 157 51.0
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 7.5e-40 167.9 159 59.1
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.8e-39 166.0 168 51.8
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 6.3e-39 164.9 166 54.8
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.5e-37 159.1 166 52.4
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-36 157.5 166 51.8
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.8e-33 146.7 116 65.5
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.2e-31 139.8 97 68.0
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.2e-31 139.8 174 47.7
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.4e-30 136.3 89 73.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.0e-29 133.3 152 44.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.3e-28 130.6 91 65.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.3e-27 125.9 89 69.7
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.6e-26 123.6 91 63.7
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 5.8e-24 115.2 72 72.2
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.8e-17 93.6 65 69.2
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.0e-16 90.1 79 54.4
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.5e-11 73.9 106 43.4
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-11 73.2 76 51.3
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.2e-08 64.3 80 43.8
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.2e-08 64.3 106 35.8
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 2.9e-07 59.7 172 28.5
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 8.4e-07 58.2 57 49.1
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.4e-06 57.4 64 40.6
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.2e-06 54.7 33 72.7


User provided reference genes

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