Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 0.0e+00 1075.8 560 100.0
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 9.1e-280 966.5 542 90.8
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 5.5e-277 957.2 561 89.7
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 4.7e-276 954.1 561 89.3
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 8.0e-276 953.4 561 88.9
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 3.0e-275 951.4 561 87.7
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 8.8e-275 949.9 561 88.8
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 8.2e-273 943.3 561 87.9
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 4.4e-266 921.0 561 84.0
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 9.8e-266 919.8 561 84.0
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 6.3e-265 917.1 561 85.4
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 6.3e-265 917.1 561 85.4
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 5.9e-263 910.6 560 83.0
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.2e-260 902.9 561 83.6
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 1.2e-260 902.9 561 81.6
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 2.7e-260 901.7 600 78.2
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 3.6e-260 901.4 561 83.6
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 4.4e-258 894.4 562 81.1
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 5.7e-258 894.0 626 75.7
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 1.1e-256 889.8 562 81.9
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 7.0e-256 887.1 561 80.6
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-255 886.3 561 80.9
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 5.0e-254 880.9 562 79.5
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 1.1e-253 879.8 561 81.5
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.5e-253 879.4 561 80.2
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.5e-253 879.4 561 80.2
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 2.5e-253 878.6 562 81.1
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 3.3e-253 878.2 563 80.5
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 8.0e-252 873.6 561 79.7
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.0e-251 873.2 561 79.9
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 1.4e-251 872.8 561 80.0
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 2.3e-251 872.1 561 80.6
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 3.0e-251 871.7 562 79.0
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 8.9e-251 870.2 562 79.9
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 4.9e-249 864.4 542 83.4
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.2e-247 859.8 561 78.6
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 6.6e-246 854.0 561 78.4
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.6e-246 854.0 546 81.3
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.1e-245 853.2 562 77.9
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.5e-245 852.8 538 81.8
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 5.6e-245 850.9 561 79.5
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 3.6e-244 848.2 562 76.9
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.0e-243 846.7 541 81.3
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 6.8e-243 844.0 542 78.6
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 2.0e-242 842.4 562 77.2
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 2.6e-242 842.0 562 76.7
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.7e-241 839.3 557 78.6
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.4e-240 835.5 562 77.9
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.2e-239 833.2 562 77.8
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.5e-237 825.5 561 75.9
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 3.3e-237 825.1 515 81.6
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 4.3e-237 824.7 542 77.5
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 1.2e-236 823.2 562 76.3
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.2e-236 823.2 527 81.6
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 2.8e-236 822.0 562 75.6
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 2.3e-235 818.9 612 72.1
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 8.9e-235 817.0 576 74.8
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.5e-234 816.2 648 68.7
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 3.4e-234 815.1 513 81.7
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 6.4e-233 810.8 562 73.8
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 1.1e-229 800.0 561 73.3
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 4.3e-229 798.1 539 75.7
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 4.3e-229 798.1 564 73.2
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 4.3e-229 798.1 560 74.1
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 8.4e-225 783.9 561 72.9
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 3.2e-224 781.9 561 72.2
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 2.1e-223 779.2 561 72.0
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 7.8e-223 777.3 514 77.4
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 3.0e-222 775.4 561 71.8
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 3.0e-222 775.4 561 71.8
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 3.0e-222 775.4 566 71.2
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.1e-221 773.5 562 71.9
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.1e-221 773.5 562 71.9
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 1.9e-221 772.7 562 68.9
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 3.3e-221 771.9 544 73.9
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 3.3e-221 771.9 561 70.8
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 1.2e-220 770.0 576 71.2
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 4.7e-220 768.1 532 74.2
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.4e-219 765.8 576 71.4
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 3.1e-219 765.4 544 71.9
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 4.4e-218 761.5 561 70.8
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 1.1e-216 756.9 562 70.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.1e-216 756.9 561 70.6
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.6e-215 753.1 533 73.2
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 2.1e-215 752.7 562 70.1
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 2.1e-215 752.7 544 70.8
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 3.9e-214 748.4 561 70.9
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 1.2e-210 736.9 512 73.6
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 1.7e-201 706.4 594 66.2
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.6e-188 663.3 476 72.3
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.5e-185 651.4 393 84.5
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 3.4e-178 629.0 455 69.7
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 3.6e-175 619.0 433 71.8
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 5.3e-171 605.1 562 56.9
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 1.2e-170 604.0 547 57.8
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.3e-164 583.9 554 58.3
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 1.7e-164 583.6 569 55.4
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 8.8e-158 561.2 563 53.5
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 6.5e-153 545.0 566 51.8
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 2.2e-148 530.0 287 95.5
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 5.4e-147 525.4 381 70.6
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.9e-145 519.6 339 80.5
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 7.2e-144 515.0 531 57.3
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.3e-129 467.6 348 69.0
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 2.6e-125 453.4 260 86.5
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 2.4e-123 446.8 356 61.0
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.0e-122 443.7 340 65.3
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.1e-83 315.1 554 37.0
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 8.7e-73 278.9 208 74.0
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 1.9e-67 261.2 198 66.7
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 5.3e-62 243.0 197 68.5
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 1.2e-61 241.9 162 79.0
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 2.6e-61 240.7 144 77.1
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.6e-58 231.5 180 60.6
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-52 211.8 130 78.5
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 2.9e-36 157.5 90 82.2
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 3.0e-33 147.5 180 48.9
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 3.0e-33 147.5 178 48.9
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 3.7e-31 140.6 158 52.5
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 3.7e-31 140.6 158 52.5
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 8.3e-31 139.4 90 75.6
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.8e-30 138.3 130 57.7
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 7.2e-27 126.3 173 46.2
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.8e-24 115.9 129 50.4
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 3.7e-23 114.0 77 71.4
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 3.5e-21 107.5 58 87.9
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 5.2e-17 93.6 87 60.9
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-16 92.4 90 56.7
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.9e-14 85.1 79 57.0
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 3.1e-09 67.8 162 24.7
arahy.Tifrunner.gnm1.ann1.DY833H Arachis hypogaea HOM05D005803 ORTHO05D086144 2.9e-07 61.2 47 68.1
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 5.4e-06 57.0 47 48.9
Duzib150G0839 Durio zibethinus HOM05D003301 ORTHO05D003665 9.2e-06 56.2 322 22.4


User provided reference genes

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