Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0003148 Lotus japonicus HOM05D061959 ORTHO05D048474 1.8e-63 245.7 122 100.0
Lj5g0007922 Lotus japonicus HOM05D061959 ORTHO05D048474 1.7e-21 106.3 69 78.3
Ca_02430_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.5e-09 66.6 53 62.3
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 3.3e-09 65.5 73 49.3
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 5.6e-09 64.7 51 64.7
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 5.6e-09 64.7 51 64.7
Sed0026480 Sechium edule HOM05D000176 ORTHO05D000106 5.6e-09 64.7 51 64.7
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 9.6e-09 63.9 51 64.7
Ca_25773_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 9.6e-09 63.9 51 62.7
Ca_08875_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.3e-08 63.5 51 60.8
Ca_03682_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.6e-08 63.2 51 64.7
Ca_20886_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.6e-08 63.2 51 62.7
Ca_02570_v3 Cicer arietinum L. HOM05D001569 ORTHO05D002183 2.1e-08 62.8 51 62.7
Ca_04467_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.1e-08 62.8 51 64.7
Ca_19794_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.8e-08 62.4 50 64.0
Ca_07399_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 3.7e-08 62.0 51 62.7
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 4.8e-08 61.6 51 60.8
Ca_24132_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 6.2e-08 61.2 50 62.0
VMungo0647G2344 Vigna mungo HOM05D000176 ORTHO05D000106 6.2e-08 61.2 104 33.7
Ca_02919_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 8.1e-08 60.8 51 60.8
Lj1C99T4 Lonicera japonica HOM05D000176 ORTHO05D000106 8.1e-08 60.8 52 55.8
Ca_02442_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.1e-07 60.5 104 38.5
Ca_23078_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.4e-07 60.1 51 58.8
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 1.8e-07 59.7 76 46.1
Lj2C590G2 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-07 59.7 51 56.9
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 1.8e-07 59.7 76 46.1
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 2.4e-07 59.3 74 45.9
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 2.4e-07 59.3 51 58.8
Ca_12141_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.4e-07 59.3 51 60.8
Ca_04411_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 3.1e-07 58.9 51 60.8
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.1e-07 58.9 51 58.8
Ca_11515_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 3.1e-07 58.9 51 58.8
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 3.1e-07 58.9 76 46.1
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 3.1e-07 58.9 76 46.1
Ca_26998_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 4.0e-07 58.5 51 58.8
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 5.3e-07 58.2 76 44.7
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 5.3e-07 58.2 76 44.7
Sabra01G0157300 Salix brachista HOM05D000176 ORTHO05D000106 5.3e-07 58.2 51 56.9
CSS0042022 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.9e-07 57.8 52 51.9
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 6.9e-07 57.8 104 37.5
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 6.9e-07 57.8 76 46.1
Ca_04892_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 9.0e-07 57.4 51 58.8
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 9.0e-07 57.4 51 56.9
Ca_02693_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.2e-06 57.0 50 56.0
Ca_27088_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.2e-06 57.0 50 62.0
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 1.2e-06 57.0 104 36.5
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 1.2e-06 57.0 51 54.9
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 1.5e-06 56.6 104 36.5
AL1G30280 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 52.9
AT1G17930 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 52.9
BcaB07g34015 Brassica carinata HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 52.9
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 52.9
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 52.9
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 52.9
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 52.9
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.5e-06 56.6 104 36.5
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.5e-06 56.6 104 36.5
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 54.9
CARHR018550 Cardamine hirsuta HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 52.9
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 1.5e-06 56.6 73 46.6
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 1.5e-06 56.6 77 42.9
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 1.5e-06 56.6 73 46.6
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 56.9
THA.LOC104799018 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 1.5e-06 56.6 51 52.9
Aa31LG11G4340 Aethionema arabicum HOM05D000176 ORTHO05D000106 2.0e-06 56.2 51 52.9
ATR0752G037 Amborella trichopoda HOM05D007095 ORTHO05D008898 2.0e-06 56.2 51 52.9
Ca_03222_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.0e-06 56.2 51 54.9
Ca_07316_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.0e-06 56.2 51 56.9
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 2.0e-06 56.2 51 54.9
Lj2C1004G7 Lonicera japonica HOM05D000176 ORTHO05D000106 2.0e-06 56.2 51 52.9
Lj9C3T3 Lonicera japonica HOM05D000176 ORTHO05D000106 2.0e-06 56.2 51 54.9
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 2.0e-06 56.2 51 56.9
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 2.0e-06 56.2 51 56.9
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 2.6e-06 55.8 51 56.9
Lj4C692T4 Lonicera japonica HOM05D000176 ORTHO05D000106 2.6e-06 55.8 51 52.9
Lj8C619G11 Lonicera japonica HOM05D000176 ORTHO05D000106 2.6e-06 55.8 51 52.9
Peaxi162Scf00020g02126 Petunia axillaris HOM05D000176 ORTHO05D000106 2.6e-06 55.8 104 35.6
Peaxi162Scf00384g01218 Petunia axillaris HOM05D000176 ORTHO05D000106 2.6e-06 55.8 104 35.6
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 2.6e-06 55.8 104 37.5
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 2.6e-06 55.8 51 54.9
Aa31sc83G70 Aethionema arabicum HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
AL4G16100 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
AT2G25010 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 54.9
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
A04p19430 Brassica napus HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
BolC4t27041H Brassica oleracea HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
BraA04t17538Z Brassica rapa HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
Ca_26486_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 3.4e-06 55.5 66 47.0
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
Lj3A875G59 Lonicera japonica HOM05D000176 ORTHO05D000106 3.4e-06 55.5 85 38.8
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 54.9
RcHm_v2.0_Chr5g0043391 Rosa chinensis HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 51.0
Sp4g03990 Schrenkiella parvula HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
THA.LOC104823099 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 3.4e-06 55.5 51 56.9
vmacro12437 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 3.4e-06 55.5 104 36.5
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 4.5e-06 55.1 104 35.6
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 4.5e-06 55.1 104 36.5
Sp1g16000 Schrenkiella parvula HOM05D000176 ORTHO05D000106 4.5e-06 55.1 51 51.0
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 5.8e-06 54.7 51 54.9
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 5.8e-06 54.7 74 44.6
FvH4_6g36961 Fragaria vesca HOM05D000176 ORTHO05D000106 5.8e-06 54.7 51 49.0
Lj1A609T10 Lonicera japonica HOM05D000176 ORTHO05D000106 5.8e-06 54.7 51 51.0
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 5.8e-06 54.7 51 52.9
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 7.6e-06 54.3 104 35.6
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 7.6e-06 54.3 104 35.6
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 7.6e-06 54.3 104 36.5
Cpa.g.sc136.13 Carica papaya HOM05D000176 ORTHO05D000106 7.6e-06 54.3 104 35.6
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 7.6e-06 54.3 104 35.6
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 7.6e-06 54.3 104 35.6
Lj5C479G2 Lonicera japonica HOM05D000176 ORTHO05D000106 7.6e-06 54.3 51 52.9
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 7.6e-06 54.3 51 52.9
RcHm_v2.0_Chr1g0332031 Rosa chinensis HOM05D000176 ORTHO05D000106 7.6e-06 54.3 51 51.0
Solyc05g056010.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 7.6e-06 54.3 51 52.9
Sopen05g034420 Solanum pennellii HOM05D000176 ORTHO05D000106 7.6e-06 54.3 51 52.9
PGSC0003DMG400023346 Solanum tuberosum HOM05D000176 ORTHO05D000106 7.6e-06 54.3 51 52.9
ATR0782G156 Amborella trichopoda HOM05D007095 ORTHO05D008898 1.0e-05 53.9 110 32.7
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 52.9
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 52.9
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 1.0e-05 53.9 104 36.5
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 1.0e-05 53.9 104 36.5
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 1.0e-05 53.9 104 36.5
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 1.0e-05 53.9 104 36.5
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 1.0e-05 53.9 51 51.0
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 51.0
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 54.9
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 54.9
Ca_03378_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.0e-05 53.9 51 51.0
Ca_30631_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.0e-05 53.9 51 51.0
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 1.0e-05 53.9 104 36.5
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 52.9
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 52.9
PSO478G3173 Papaver somniferum HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 47.1
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 52.9
Sp3g23470 Schrenkiella parvula HOM05D000176 ORTHO05D000106 1.0e-05 53.9 104 36.5
GSVIVG01000818001 Vitis vinifera HOM05D000176 ORTHO05D000106 1.0e-05 53.9 51 54.9


User provided reference genes

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