Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 4.5e-214 747.7 382 100.0
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 1.1e-178 630.2 386 85.2
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 8.9e-178 627.1 386 85.0
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 1.2e-171 606.7 370 85.1
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 2.4e-170 602.4 377 83.0
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 8.9e-170 600.5 371 85.2
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 7.1e-167 590.9 376 80.9
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 3.5e-166 588.6 375 81.1
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 9.6e-164 580.5 374 80.5
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 7.1e-159 564.3 381 76.1
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 2.5e-156 555.8 332 86.4
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 3.6e-155 552.0 395 73.2
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 6.2e-155 551.2 375 75.2
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 8.1e-155 550.8 381 73.8
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 8.1e-155 550.8 386 74.9
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 9.0e-154 547.4 355 79.2
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 2.6e-153 545.8 355 78.6
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 2.2e-152 542.7 380 74.5
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 3.8e-152 542.0 386 73.6
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 3.5e-150 535.4 323 82.7
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 2.3e-149 532.7 370 74.3
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 3.9e-149 531.9 359 74.9
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 8.7e-149 530.8 356 75.0
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.9e-148 529.6 360 74.7
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 5.6e-148 528.1 364 74.7
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 5.6e-148 528.1 376 72.6
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 1.1e-146 523.9 385 71.2
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 6.9e-146 521.2 376 72.1
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 1.3e-144 516.9 357 73.1
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 3.8e-144 515.4 375 70.4
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 4.9e-144 515.0 357 73.7
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 4.9e-144 515.0 389 69.9
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 6.5e-144 514.6 380 70.5
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 4.2e-143 511.9 361 71.5
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 7.1e-143 511.1 357 73.4
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.2e-142 510.4 363 70.5
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 1.2e-142 510.4 373 71.6
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 3.5e-142 508.8 362 71.5
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 1.8e-141 506.5 382 70.9
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 3.9e-141 505.4 363 70.5
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.1e-140 503.8 381 70.6
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 1.9e-140 503.1 360 71.9
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 5.7e-140 501.5 362 70.2
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 7.4e-140 501.1 382 70.2
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 9.6e-140 500.7 412 65.8
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 2.1e-139 499.6 360 71.9
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 1.1e-138 497.3 359 73.0
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 2.4e-138 496.1 358 72.6
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 3.1e-138 495.7 418 63.6
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 4.0e-138 495.4 317 75.7
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 4.0e-138 495.4 317 77.6
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.5e-137 493.4 387 67.7
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 2.6e-137 492.7 313 78.9
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 3.4e-137 492.3 317 76.7
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 4.5e-137 491.9 382 69.6
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 4.5e-137 491.9 363 70.2
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 5.8e-137 491.5 382 68.8
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 7.6e-137 491.1 372 68.5
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 1.0e-136 490.7 359 71.6
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 1.0e-136 490.7 317 76.0
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 1.3e-136 490.3 358 72.6
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 2.9e-136 489.2 380 69.2
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 3.8e-136 488.8 381 68.2
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 6.5e-136 488.0 380 68.9
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 8.4e-136 487.6 359 71.0
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.1e-135 487.3 323 73.7
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 1.4e-135 486.9 355 69.3
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 9.3e-135 484.2 312 76.3
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 9.3e-135 484.2 404 64.6
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.2e-134 483.8 384 66.9
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.2e-134 483.8 363 68.3
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 1.6e-134 483.4 367 69.2
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 2.1e-134 483.0 363 70.0
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 2.7e-134 482.6 387 67.4
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 6.1e-134 481.5 394 66.0
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 7.9e-134 481.1 375 68.0
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 1.0e-133 480.7 390 65.4
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 6.7e-133 478.0 381 66.9
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 6.7e-133 478.0 380 66.8
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 5.7e-132 474.9 321 75.4
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 7.4e-132 474.6 370 67.6
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 2.2e-131 473.0 373 68.1
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 4.8e-131 471.9 369 65.3
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 8.2e-131 471.1 321 74.5
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 5.3e-130 468.4 317 74.4
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 6.9e-130 468.0 399 63.9
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 1.5e-129 466.8 321 74.1
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 1.5e-129 466.8 321 74.1
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 2.0e-129 466.5 271 87.8
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 4.5e-129 465.3 328 69.8
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 1.0e-128 464.2 382 64.7
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 6.5e-128 461.5 293 77.1
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 8.5e-128 461.1 371 65.0
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 8.5e-128 461.1 286 80.8
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 1.9e-127 459.9 359 68.0
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 7.2e-127 458.0 291 77.0
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 3.6e-126 455.7 311 74.9
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 2.3e-125 453.0 321 72.9
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 2.0e-124 449.9 313 73.5
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 3.3e-124 449.1 426 57.3
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 3.2e-119 432.6 316 70.9
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 9.4e-119 431.0 348 66.1
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 3.1e-114 416.0 258 78.3
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.2e-113 414.1 258 80.6
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.0e-109 399.4 386 59.8
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 7.2e-103 378.3 308 62.3
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 9.4e-103 377.9 380 56.1
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 1.8e-101 373.6 261 72.8
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.7e-99 367.1 316 59.5
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 3.7e-99 365.9 314 62.1
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 7.0e-98 361.7 242 75.6
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 2.0e-97 360.1 364 56.6
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.3e-96 357.5 304 63.5
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 5.0e-96 355.5 328 55.8
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 9.4e-95 351.3 375 54.9
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 4.4e-92 342.4 387 53.2
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.7e-88 330.5 196 81.1
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 2.3e-85 320.1 318 54.1
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.9e-83 313.2 274 62.0
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 5.9e-81 305.4 176 88.1
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 1.0e-80 304.7 284 57.4
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.5e-79 300.8 192 80.2
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 5.2e-77 292.4 191 79.6
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 2.9e-75 286.6 198 74.7
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 6.6e-72 275.4 198 76.8
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 2.6e-68 263.5 339 41.0
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 1.9e-66 257.3 165 81.2
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.4e-61 241.1 201 61.7
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 4.4e-60 236.1 345 40.3
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 5.8e-60 235.7 171 70.8
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 3.5e-57 226.5 175 69.7
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 1.8e-53 214.2 344 39.5
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.8e-51 206.5 124 76.6
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 6.4e-51 205.7 285 40.0
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.4e-50 203.8 125 74.4
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 5.1e-48 196.1 148 66.9
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 5.1e-48 196.1 258 44.2
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 5.6e-47 192.6 157 62.4
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.3e-43 181.4 359 35.1
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 4.0e-37 159.8 129 62.8
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 1.1e-34 151.8 87 88.5
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 4.2e-34 149.8 161 53.4
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 2.1e-33 147.5 108 65.7
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 1.6e-30 137.9 95 70.5
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.8e-29 134.4 317 33.8
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 1.5e-23 114.8 70 75.7
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 6.5e-19 99.4 79 64.6
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.2e-17 95.1 71 63.4
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.9e-09 65.9 42 71.4


User provided reference genes

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