Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0002908 Lotus japonicus HOM05D004059 ORTHO05D004591 1.8e-285 985.3 524 100.0
VMungo1309G0851 Vigna mungo HOM05D004059 ORTHO05D004591 1.2e-180 637.1 537 71.3
Glyma.09G064200 Glycine max HOM05D004059 ORTHO05D004591 2.0e-180 636.3 555 69.7
Phvul.009G231600 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 5.7e-175 618.2 530 69.1
Medtr2g039620 Medicago truncatula HOM05D004059 ORTHO05D004591 7.7e-172 607.8 537 67.4
Glyma.15G170500 Glycine max HOM05D004059 ORTHO05D004591 2.7e-169 599.4 508 71.3
TPR.G13416 Trifolium pratense HOM05D004059 ORTHO05D004591 2.6e-167 592.8 542 66.1
Psat1g140200 Pisum sativum HOM05D004059 ORTHO05D004591 5.0e-163 578.6 541 64.7
CiPaw.03G214200 Carya illinoinensis HOM05D004059 ORTHO05D004591 3.5e-124 449.5 544 53.5
Glyma.17G054000 Glycine max HOM05D004059 ORTHO05D004591 6.6e-123 445.3 550 53.6
arahy.Tifrunner.gnm1.ann1.H4FASW Arachis hypogaea HOM05D004059 ORTHO05D004591 1.9e-122 443.7 509 58.0
Lj4g0028074 Lotus japonicus HOM05D004059 ORTHO05D004591 2.0e-119 433.7 533 53.8
Cfa003070 Carpinus fangiana HOM05D004059 ORTHO05D004591 7.5e-119 431.8 539 51.2
QL02p062365 Quercus lobata HOM05D004059 ORTHO05D004591 1.5e-114 417.5 534 51.9
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 6.4e-110 402.1 542 49.6
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 1.9e-106 390.6 409 60.4
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 1.2e-105 387.9 542 48.0
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 3.6e-105 386.3 576 46.4
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 6.2e-105 385.6 571 47.5
Hma1.2p1_1838F.1_g304870 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 3.8e-102 376.3 525 46.3
Lalb_Chr11g0074551 Lupinus albus HOM05D004059 ORTHO05D004591 4.2e-101 372.9 407 57.7
VMungo1215G3226 Vigna mungo HOM05D004059 ORTHO05D004591 6.0e-100 369.0 532 46.6
Eucgr.C03476 Eucalyptus grandis HOM05D004059 ORTHO05D004591 3.9e-99 366.3 561 44.4
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 7.3e-98 362.1 563 44.9
GSVIVG01015189001 Vitis vinifera HOM05D004059 ORTHO05D004591 9.0e-96 355.1 535 44.9
TAR624G0558 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.5e-95 354.4 539 44.3
Duzib187G0197 Durio zibethinus HOM05D004059 ORTHO05D004591 4.5e-95 352.8 547 45.9
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 3.2e-93 346.7 557 46.0
Potri.006G148800 Populus trichocarpa HOM05D004059 ORTHO05D004591 2.7e-92 343.6 595 41.5
Phvul.003G135700 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 4.6e-92 342.8 513 45.8
Sabra06G0117700 Salix brachista HOM05D004059 ORTHO05D004591 7.9e-92 342.0 583 42.5
Ciclev10007937m.g Citrus clementina HOM05D004059 ORTHO05D004591 3.0e-91 340.1 559 44.5
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 2.5e-90 337.0 547 45.5
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 9.6e-90 335.1 569 43.9
TWI34G0199 Tripterygium wilfordii HOM05D004059 ORTHO05D004591 1.6e-89 334.3 544 43.0
Atru.chr7.1612 Acer truncatum HOM05D004059 ORTHO05D004591 4.8e-89 332.8 544 44.7
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 4.8e-89 332.8 535 44.5
Duzib168G0233 Durio zibethinus HOM05D004059 ORTHO05D004591 4.8e-89 332.8 578 43.1
CSS0003764 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 6.2e-89 332.4 501 45.9
TAR636G3314 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.1e-88 331.6 535 41.9
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 1.8e-88 330.9 493 46.2
RcHm_v2.0_Chr2g0093571 Rosa chinensis HOM05D004059 ORTHO05D004591 4.0e-88 329.7 591 43.0
Manes.16G101000 Manihot esculenta HOM05D004059 ORTHO05D004591 5.8e-87 325.9 564 42.4
Sed0008144 Sechium edule HOM05D004059 ORTHO05D004591 2.9e-86 323.6 557 41.5
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 4.9e-86 322.8 585 41.7
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.4e-85 320.5 589 40.9
FAN26G3139 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.4e-85 320.5 593 41.3
arahy.Tifrunner.gnm1.ann1.MX4JUX Arachis hypogaea HOM05D004059 ORTHO05D004591 1.2e-84 318.2 542 44.3
FAN28G1400 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.1e-84 317.4 595 41.7
Manes.03G034700 Manihot esculenta HOM05D004059 ORTHO05D004591 1.3e-83 314.7 559 41.9
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 3.0e-83 313.5 533 39.6
FAN26G1668 Fragaria x ananassa HOM05D004059 ORTHO05D004591 6.7e-83 312.4 587 41.1
AUR62033947 Chenopodium quinoa HOM05D004059 ORTHO05D004591 2.5e-82 310.5 554 41.5
arahy.Tifrunner.gnm1.ann1.0BQ45N Arachis hypogaea HOM05D004059 ORTHO05D004591 5.6e-82 309.3 543 42.7
AUR62029052 Chenopodium quinoa HOM05D004059 ORTHO05D004591 7.4e-82 308.9 555 42.0
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 2.1e-81 307.4 546 40.8
VMungo1215G0279 Vigna mungo HOM05D004059 ORTHO05D004591 4.8e-81 306.2 516 44.2
Rhsim03G0231600 Rhododendron simsii HOM05D004059 ORTHO05D004591 8.2e-81 305.4 572 42.0
Gohir.D07G011700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.8e-80 304.3 542 43.5
THA.LOC104818114 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 2.0e-79 300.8 522 43.3
Gohir.A05G030300 Gossypium hirsutum HOM05D004059 ORTHO05D004591 2.6e-79 300.4 548 40.3
Oeu017604.1 Olea europaea HOM05D004059 ORTHO05D004591 7.6e-79 298.9 548 39.8
vmacro06298 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 1.7e-78 297.7 507 42.8
Gohir.D05G031700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 2.2e-78 297.4 546 40.5
Gorai.001G012400 Gossypium raimondii HOM05D004059 ORTHO05D004591 3.8e-78 296.6 548 43.1
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 4.9e-78 296.2 565 40.4
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 6.5e-78 295.8 541 42.0
Gorai.009G031900 Gossypium raimondii HOM05D004059 ORTHO05D004591 4.2e-77 293.1 548 40.1
HanXRQChr03g0060341 Helianthus annuus HOM05D004059 ORTHO05D004591 1.2e-76 291.6 542 38.9
Migut.J00583 Erythranthe guttata HOM05D004059 ORTHO05D004591 1.6e-76 291.2 535 41.3
Rhsim05G0018600 Rhododendron simsii HOM05D004059 ORTHO05D004591 3.0e-75 287.0 501 42.9
ECA240G1274 Erigeron canadensis HOM05D004059 ORTHO05D004591 6.7e-75 285.8 539 38.8
Nn6g35501 Nelumbo nucifera HOM05D004059 ORTHO05D004591 5.7e-74 282.7 532 38.9
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 1.3e-73 281.6 552 41.1
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 4.8e-73 279.6 552 39.1
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 6.3e-73 279.3 543 40.1
SGA_v2.0_scaffold62G21623 Striga asiatica HOM05D004059 ORTHO05D004591 4.1e-72 276.6 545 38.7
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 5.3e-72 276.2 536 38.8
Solyc07g039570.3 Solanum lycopersicum HOM05D004059 ORTHO05D004591 1.0e-70 271.9 544 38.1
CAN.G52.7 Capsicum annuum HOM05D004059 ORTHO05D004591 1.1e-69 268.5 525 37.5
CiPaw.04G148500 Carya illinoinensis HOM05D004059 ORTHO05D004591 1.9e-69 267.7 417 47.2
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 3.2e-69 266.9 416 45.9
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 7.2e-69 265.8 543 39.4
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 7.2e-69 265.8 543 39.4
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.6e-68 264.6 548 37.8
Sopen07g018910 Solanum pennellii HOM05D004059 ORTHO05D004591 2.7e-68 263.8 501 39.3
Thhalv10013360m.g Eutrema salsugineum HOM05D004059 ORTHO05D004591 6.1e-68 262.7 502 40.0
Aqoxy7G04020 Aquilegia oxysepala HOM05D004059 ORTHO05D004591 1.0e-67 261.9 547 36.6
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 1.4e-67 261.5 460 41.3
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 1.8e-67 261.2 518 39.2
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.9e-66 257.7 542 37.8
SalBow6G2434 Salvia bowleyana HOM05D004059 ORTHO05D004591 3.3e-66 256.9 524 39.5
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 5.7e-66 256.1 540 37.8
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 3.4e-63 246.9 672 34.5
PSO210G4563 Papaver somniferum HOM05D004059 ORTHO05D004591 4.5e-63 246.5 569 35.3
PSO210G1620 Papaver somniferum HOM05D004059 ORTHO05D004591 1.3e-62 245.0 572 35.3
Cpa.g.sc61.16 Carica papaya HOM05D004059 ORTHO05D004591 1.7e-62 244.6 539 38.6
EL10Ac8g19192 Beta vulgaris HOM05D004059 ORTHO05D004591 2.2e-62 244.2 492 42.7
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 2.9e-62 243.8 468 41.5
MBI01_g09949_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 3.8e-62 243.4 493 38.7
SGA_v2.0_scaffold23G10028 Striga asiatica HOM05D004059 ORTHO05D004591 1.1e-61 241.9 537 36.5
Lj4C294G8 Lonicera japonica HOM05D004059 ORTHO05D004591 1.6e-60 238.0 504 37.7
Aa31LG3G12850 Aethionema arabicum HOM05D004059 ORTHO05D004591 2.7e-60 237.3 548 36.9
MELO3C015488.2 Cucumis melo HOM05D004059 ORTHO05D004591 7.9e-60 235.7 494 38.1
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 8.8e-59 232.3 514 38.9
DCAR_031333 Daucus carota HOM05D004059 ORTHO05D004591 4.8e-57 226.5 516 35.1
Gorai.010G083900 Gossypium raimondii HOM05D004059 ORTHO05D004591 8.2e-57 225.7 490 38.4
Lsat_1_v5_gn_7_36701 Lactuca sativa HOM05D004059 ORTHO05D004591 2.4e-56 224.2 489 37.0
BcaB05g22300 Brassica carinata HOM05D004059 ORTHO05D004591 1.7e-54 218.0 469 40.5
PGSC0003DMG400022043 Solanum tuberosum HOM05D004059 ORTHO05D004591 2.2e-54 217.6 389 42.7
Gohir.D06G071950 Gossypium hirsutum HOM05D004059 ORTHO05D004591 3.8e-54 216.9 513 36.8
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 6.5e-54 216.1 530 34.5
Gohir.A07G011900 Gossypium hirsutum HOM05D004059 ORTHO05D004591 4.2e-53 213.4 414 43.0
C09p48620 Brassica napus HOM05D004059 ORTHO05D004591 5.5e-53 213.0 535 34.4
unitig_749.g14229 Utricularia gibba HOM05D004059 ORTHO05D004591 6.1e-52 209.5 521 34.4
Sc08g0008540 Simmondsia chinensis HOM05D004059 ORTHO05D004591 1.1e-50 205.3 537 34.3
Peaxi162Scf00498g00042 Petunia axillaris HOM05D004059 ORTHO05D004591 1.3e-49 201.8 386 40.7
Hund25946 Selenicereus undatus HOM05D004059 ORTHO05D004591 2.8e-49 200.7 414 39.6
Lj4C294T9 Lonicera japonica HOM05D004059 ORTHO05D004591 3.1e-48 197.2 395 40.3
CARHR270700 Cardamine hirsuta HOM05D004059 ORTHO05D004591 4.1e-48 196.8 523 35.2
ATR0749G078 Amborella trichopoda HOM05D004059 ORTHO05D004591 5.9e-47 193.0 531 33.9
Glyma.13G105400 Glycine max HOM05D004059 ORTHO05D004591 1.0e-46 192.2 287 49.5
MBI04_g36310_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 6.5e-46 189.5 476 34.9
MELO3C004627.2 Cucumis melo HOM05D004059 ORTHO05D004591 8.5e-46 189.1 535 33.6
BcaB08g36035 Brassica carinata HOM05D004059 ORTHO05D004591 3.0e-43 180.6 474 36.1
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 4.8e-41 173.3 423 36.6
CsaV3_2G001440 Cucumis sativus L. HOM05D004059 ORTHO05D004591 9.1e-40 169.1 529 32.5
THA.LOC104811746 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 1.9e-37 161.4 277 41.2
TAR383G1057 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.0e-35 155.6 452 32.5
BcaC04g20035 Brassica carinata HOM05D004059 ORTHO05D004591 2.3e-35 154.5 460 33.5
Actinidia38450 Actinidia chinensis HOM05D004059 ORTHO05D004591 3.4e-34 150.6 231 44.2
Actinidia38451 Actinidia chinensis HOM05D004059 ORTHO05D004591 4.4e-34 150.2 181 54.1
Peaxi162Scf00498g00056 Petunia axillaris HOM05D004059 ORTHO05D004591 8.3e-33 146.0 386 35.8
ClCG11G001730 Citrullus lanatus HOM05D004059 ORTHO05D004591 5.4e-32 143.3 467 30.4
Peaxi162Scf00498g00054 Petunia axillaris HOM05D004059 ORTHO05D004591 2.0e-31 141.4 305 39.7
Hma1.2p1_0672F.1_g201130 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 5.9e-31 139.8 481 28.1
HPP92_026782 Vanilla planifolia HOM05D004059 ORTHO05D004591 1.0e-30 139.0 471 29.9
BolC9t57704H Brassica oleracea HOM05D004059 ORTHO05D004591 1.1e-29 135.6 430 32.1
PGSC0003DMG400000335 Solanum tuberosum HOM05D000597 ORTHO05D004591 1.9e-29 134.8 268 39.2
Sed0013460 Sechium edule HOM05D004059 ORTHO05D004591 2.1e-28 131.3 243 41.2
CAN.G3656.1 Capsicum annuum HOM05D004059 ORTHO05D004591 2.8e-28 131.0 381 32.3
HanXRQChr09g0238101 Helianthus annuus HOM05D004059 ORTHO05D004591 1.4e-27 128.6 338 35.8
Dinv42328 Davidia involucrata HOM05D004059 ORTHO05D004591 5.2e-27 126.7 204 48.0
CAN.G1583.1 Capsicum annuum HOM05D000597 ORTHO05D004591 8.9e-27 125.9 248 37.5
Peaxi162Scf00498g00537 Petunia axillaris HOM05D000597 ORTHO05D004591 5.9e-23 113.2 205 39.5
HPP92_023889 Vanilla planifolia HOM05D004059 ORTHO05D004591 5.0e-22 110.2 267 31.5
CDE04G0617 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 1.1e-21 109.0 400 30.5
HPP92_023832 Vanilla planifolia HOM05D004059 ORTHO05D004591 2.5e-21 107.8 267 31.8
Zm00001eb240050 Zea mays HOM05D004059 ORTHO05D004591 5.6e-21 106.7 520 28.8
CDE06G2535 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 9.5e-21 105.9 232 35.3
unitig_78.g29617 Utricularia gibba HOM05D004059 ORTHO05D004591 9.5e-21 105.9 358 31.0
Os06g0570900 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 1.6e-20 105.1 551 24.0
Dinv42329 Davidia involucrata HOM05D004059 ORTHO05D004591 1.4e-19 102.1 184 39.7
SalBow1G5126 Salvia bowleyana HOM05D004059 ORTHO05D004591 2.4e-16 91.3 126 46.8
Zm00001eb385110 Zea mays HOM05D004059 ORTHO05D004591 5.4e-16 90.1 507 25.6
Zm00001eb120960 Zea mays HOM05D004059 ORTHO05D004591 2.0e-15 88.2 201 35.8
TPR.G866 Trifolium pratense HOM05D004059 ORTHO05D004591 3.5e-15 87.4 85 63.5
Nitab4.5_0002824g0150 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.9e-13 81.6 117 45.3
BolC9t57705H Brassica oleracea HOM05D004059 ORTHO05D004591 4.3e-13 80.5 102 40.2
Zm00001eb337860 Zea mays HOM05D004059 ORTHO05D004591 9.5e-13 79.3 153 38.6
SalBow1G7755 Salvia bowleyana HOM05D004059 ORTHO05D004591 1.8e-11 75.1 317 29.0
Peaxi162Scf00221g00512 Petunia axillaris HOM05D004059 ORTHO05D004591 4.0e-11 73.9 74 54.1
Sed0000136 Sechium edule HOM05D004059 ORTHO05D004591 5.8e-10 70.1 115 38.3
Nitab4.5_0002824g0140 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.7e-09 68.6 130 38.5
Zm00001eb160210 Zea mays HOM05D004059 ORTHO05D004591 2.2e-09 68.2 183 30.1
Os01g0195801 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 2.9e-09 67.8 82 43.9
Os01g0575200 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 8.3e-09 66.2 172 29.7
Rhsim11G0120500 Rhododendron simsii HOM05D000101 ORTHO05D002559 8.3e-09 66.2 172 35.5
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 1.1e-08 65.9 357 28.3
Os05g0199800 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 3.2e-08 64.3 149 32.2
SEGI_40661 Sequoiadendron giganteum HOM05D010622 ORTHO05D011909 6.0e-07 60.1 261 28.7
Zm00001eb347270 Zea mays HOM05D004059 ORTHO05D004591 1.3e-06 58.9 87 36.8
AL290U10010 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 3.0e-06 57.8 74 39.2
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 3.0e-06 57.8 143 32.9
Zm00001eb357120 Zea mays HOM05D004059 ORTHO05D004591 3.0e-06 57.8 141 30.5
SEGI_26499 Sequoiadendron giganteum HOM05D010622 ORTHO05D011909 8.6e-06 56.2 153 30.7


User provided reference genes

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