Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 5.7e-30 133.7 70 100.0
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 1.5e-14 82.4 71 71.8
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.2e-13 78.6 64 71.9
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 2.2e-13 78.6 64 68.8
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 2.2e-13 78.6 61 68.9
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.2e-13 78.6 63 68.3
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 8.2e-13 76.6 65 66.2
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 1.1e-12 76.3 70 65.7
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 2.4e-12 75.1 65 67.7
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 3.1e-12 74.7 64 71.9
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 7.0e-12 73.6 65 64.6
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 7.0e-12 73.6 75 62.7
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 9.1e-12 73.2 75 64.0
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.6e-11 72.4 71 64.8
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 1.6e-11 72.4 60 73.3
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.6e-11 72.4 61 59.0
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 2.0e-11 72.0 61 62.3
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.0e-11 72.0 73 63.0
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 2.6e-11 71.6 64 60.9
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 3.5e-11 71.2 60 66.7
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.5e-11 71.2 71 66.2
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 4.5e-11 70.9 71 64.8
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 4.5e-11 70.9 73 56.2
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 4.5e-11 70.9 73 57.5
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.9e-11 70.5 63 63.5
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 7.7e-11 70.1 61 60.7
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 7.7e-11 70.1 70 64.3
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.0e-10 69.7 63 63.5
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 1.0e-10 69.7 70 64.3
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 1.3e-10 69.3 60 66.7
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.3e-10 69.3 74 62.2
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 1.7e-10 68.9 58 65.5
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.7e-10 68.9 73 61.6
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 2.2e-10 68.6 68 67.6
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 2.2e-10 68.6 68 67.6
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.2e-10 68.6 60 68.3
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 2.9e-10 68.2 61 59.0
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 2.9e-10 68.2 61 59.0
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 2.9e-10 68.2 58 70.7
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.9e-10 68.2 63 60.3
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 2.9e-10 68.2 74 60.8
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 2.9e-10 68.2 74 60.8
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.9e-10 68.2 53 71.7
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 3.8e-10 67.8 53 71.7
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 5.0e-10 67.4 59 57.6
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 5.0e-10 67.4 52 71.2
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 5.0e-10 67.4 63 60.3
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 6.5e-10 67.0 73 61.6
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 6.5e-10 67.0 75 61.3
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.5e-10 67.0 71 63.4
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 6.5e-10 67.0 68 66.2
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 6.5e-10 67.0 63 52.4
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 8.5e-10 66.6 60 65.0
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 8.5e-10 66.6 65 69.2
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 1.1e-09 66.2 68 60.3
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 1.5e-09 65.9 64 53.1
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.9e-09 65.5 65 60.0
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.9e-09 65.5 64 60.9
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.9e-09 65.5 64 60.9
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 1.9e-09 65.5 73 60.3
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 2.5e-09 65.1 53 56.6
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 2.5e-09 65.1 53 56.6
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.5e-09 65.1 69 53.6
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.5e-09 65.1 70 57.1
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.5e-09 65.1 64 65.6
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.5e-09 65.1 69 56.5
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 3.2e-09 64.7 70 57.1
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.2e-09 64.7 70 57.1
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.2e-09 64.7 70 57.1
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.2e-09 64.7 70 62.9
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 3.2e-09 64.7 56 71.4
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 3.2e-09 64.7 63 54.0
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 3.2e-09 64.7 67 64.2
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.2e-09 64.7 64 65.6
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.2e-09 64.7 64 65.6
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 4.2e-09 64.3 63 54.0
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.2e-09 64.3 75 64.0
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 4.2e-09 64.3 71 57.7
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.5e-09 63.9 63 54.0
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 5.5e-09 63.9 63 54.0
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 5.5e-09 63.9 63 54.0
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 5.5e-09 63.9 63 54.0
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 5.5e-09 63.9 63 68.3
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 7.2e-09 63.5 70 57.1
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 7.2e-09 63.5 70 57.1
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 7.2e-09 63.5 63 63.5
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 9.4e-09 63.2 66 63.6
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 9.4e-09 63.2 63 54.0
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 9.4e-09 63.2 63 54.0
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.4e-09 63.2 70 57.1
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.4e-09 63.2 56 69.6
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 9.4e-09 63.2 71 62.0
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 9.4e-09 63.2 70 60.0
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 9.4e-09 63.2 61 59.0
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.2e-08 62.8 59 64.4
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-08 62.8 70 55.7
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 1.2e-08 62.8 59 66.1
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.6e-08 62.4 66 60.6
VMungo0540G2222 Vigna mungo HOM05D002385 ORTHO05D002245 1.6e-08 62.4 57 63.2
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 2.1e-08 62.0 69 55.1
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 2.1e-08 62.0 74 60.8
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 2.1e-08 62.0 65 53.8
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 3.6e-08 61.2 65 52.3
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.6e-08 61.2 63 58.7
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 3.6e-08 61.2 61 60.7
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 4.7e-08 60.8 74 58.1
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 6.1e-08 60.5 64 57.8
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 6.1e-08 60.5 64 51.6
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 6.1e-08 60.5 70 60.0
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 8.0e-08 60.1 79 51.9
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 1.0e-07 59.7 72 55.6
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.0e-07 59.7 72 56.9
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 1.0e-07 59.7 59 55.9
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.0e-07 59.7 64 57.8
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 1.0e-07 59.7 69 53.6
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.0e-07 59.7 65 56.9
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.0e-07 59.7 63 66.7
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.4e-07 59.3 76 53.9
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.4e-07 59.3 69 50.7
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.4e-07 59.3 51 68.6
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 62 61.3
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.4e-07 59.3 77 51.9
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.4e-07 59.3 65 56.9
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 1.4e-07 59.3 53 62.3
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.8e-07 58.9 53 64.2
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.3e-07 58.5 63 60.3
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 2.3e-07 58.5 65 56.9
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.3e-07 58.5 72 56.9
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 2.3e-07 58.5 73 53.4
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 2.3e-07 58.5 63 63.5
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.3e-07 58.5 70 54.3
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.3e-07 58.5 69 55.1
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.3e-07 58.5 61 62.3
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 2.3e-07 58.5 67 58.2
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 3.0e-07 58.2 61 63.9
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 4.0e-07 57.8 67 61.2
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 4.0e-07 57.8 56 62.5
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 4.0e-07 57.8 65 52.3
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 4.0e-07 57.8 66 47.0
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 4.0e-07 57.8 51 66.7
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 4.0e-07 57.8 69 59.4
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 5.2e-07 57.4 55 60.0
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 5.2e-07 57.4 65 55.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 5.2e-07 57.4 65 55.4
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 6.7e-07 57.0 61 52.5
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 6.7e-07 57.0 61 63.9
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 6.7e-07 57.0 61 63.9
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 6.7e-07 57.0 55 61.8
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 6.7e-07 57.0 54 57.4
A04p24750 Brassica napus HOM05D002385 ORTHO05D002245 8.8e-07 56.6 45 64.4
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 8.8e-07 56.6 61 52.5
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 8.8e-07 56.6 67 53.7
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 8.8e-07 56.6 72 47.2
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 1.2e-06 56.2 61 52.5
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 1.2e-06 56.2 51 56.9
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.2e-06 56.2 76 53.9
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.2e-06 56.2 64 57.8
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 1.2e-06 56.2 70 54.3
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.5e-06 55.8 49 59.2
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.5e-06 55.8 51 62.7
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 2.0e-06 55.5 73 54.8
AT2G32200 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.0e-06 55.5 64 50.0
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 2.0e-06 55.5 68 55.9
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 2.0e-06 55.5 65 47.7
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 2.0e-06 55.5 56 62.5
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 2.0e-06 55.5 63 49.2
HPP92_004187 Vanilla planifolia HOM05D002385 ORTHO05D002245 2.0e-06 55.5 60 55.0
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 2.6e-06 55.1 65 52.3
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.6e-06 55.1 73 49.3
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 3.3e-06 54.7 59 47.5
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 3.3e-06 54.7 67 55.2
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.4e-06 54.3 60 53.3
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 4.4e-06 54.3 51 56.9
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 4.4e-06 54.3 62 53.2
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 4.4e-06 54.3 68 55.9
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 4.4e-06 54.3 56 62.5
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 5.7e-06 53.9 65 49.2
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 5.7e-06 53.9 52 53.8
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 5.7e-06 53.9 67 55.2
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.7e-06 53.9 63 49.2
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 7.5e-06 53.5 63 46.0
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 7.5e-06 53.5 67 50.7
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 7.5e-06 53.5 63 47.6


User provided reference genes

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