Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 3.9e-227 791.2 422 100.0
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 4.3e-149 531.9 394 78.4
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 2.4e-147 526.2 390 77.2
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 4.0e-139 498.8 358 80.2
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 2.3e-134 483.0 325 83.1
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 4.1e-131 472.2 285 90.9
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 5.9e-130 468.4 285 90.2
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.7e-129 466.8 285 90.5
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.4e-128 463.8 297 87.5
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.9e-128 463.4 285 89.8
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 5.5e-128 461.8 395 67.3
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 1.5e-125 453.8 285 86.0
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.4e-123 447.2 287 86.1
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 5.3e-123 445.3 286 85.3
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 6.9e-123 444.9 285 84.6
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.5e-122 443.7 285 84.6
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 7.7e-122 441.4 285 84.9
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.2e-121 439.9 399 66.9
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.1e-120 437.6 285 86.7
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.2e-120 436.0 285 85.6
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 3.2e-120 436.0 287 83.3
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 4.2e-120 435.6 285 83.5
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.5e-120 435.3 285 82.5
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 7.2e-120 434.9 324 75.3
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 7.2e-120 434.9 285 83.9
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 9.4e-120 434.5 285 82.8
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.7e-119 432.2 285 81.4
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.1e-119 431.8 287 82.2
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.0e-118 431.0 333 73.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 1.4e-118 430.6 285 83.5
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.8e-118 430.3 319 76.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 2.3e-118 429.9 285 82.5
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 2.3e-118 429.9 285 82.5
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.3e-118 429.9 285 81.1
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.3e-118 429.9 285 85.3
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 5.1e-118 428.7 285 83.5
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.6e-117 426.4 308 79.9
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 3.3e-117 426.0 285 82.5
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 7.4e-117 424.9 285 81.8
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 8.2e-116 421.4 287 84.3
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.1e-115 421.0 287 82.6
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.4e-115 420.6 351 69.8
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.8e-115 420.2 285 80.7
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.0e-114 416.8 286 82.2
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 5.0e-113 412.1 285 82.8
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 8.5e-113 411.4 286 80.8
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 8.5e-113 411.4 288 81.6
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.9e-112 410.2 421 61.0
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.2e-111 407.5 288 79.9
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 2.1e-111 406.8 285 82.5
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 6.1e-111 405.2 298 76.5
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.0e-110 404.4 239 79.5
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.0e-110 402.9 285 78.2
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.9e-110 402.5 351 67.5
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.7e-110 401.7 291 79.0
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.3e-109 399.4 285 78.2
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 3.7e-108 396.0 285 78.6
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.8e-107 393.7 392 62.2
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.2e-106 391.0 239 76.6
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 2.0e-106 390.2 239 78.7
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 5.9e-106 388.7 241 76.8
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.5e-105 385.2 239 76.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 6.5e-105 385.2 287 77.4
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 6.5e-105 385.2 290 75.5
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.2e-103 380.9 245 75.5
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 4.7e-103 379.0 337 68.0
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 4.7e-103 379.0 245 75.1
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 3.0e-102 376.3 288 75.3
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 5.2e-102 375.6 310 71.6
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.2e-101 374.4 274 67.5
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.6e-101 373.2 238 74.8
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.3e-101 372.9 285 75.1
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 5.7e-101 372.1 293 74.7
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 5.7e-101 372.1 285 75.1
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 9.7e-101 371.3 210 84.3
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 2.8e-100 369.8 342 65.8
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 8.2e-100 368.2 305 71.1
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 8.2e-100 368.2 289 73.0
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.4e-99 367.5 285 73.7
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.8e-99 367.1 283 74.6
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 4.1e-99 365.9 244 73.0
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.1e-99 365.9 289 73.4
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.6e-98 364.0 242 72.3
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 5.9e-98 362.1 240 70.8
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 1.0e-97 361.3 286 72.4
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 5.0e-97 359.0 243 72.0
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 5.0e-97 359.0 262 69.1
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 6.5e-97 358.6 285 73.7
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.1e-96 357.8 318 67.6
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 3.2e-96 356.3 243 71.6
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 3.2e-96 356.3 244 72.1
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 3.2e-96 356.3 287 69.7
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.2e-96 355.9 285 72.3
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 2.3e-94 350.1 240 70.8
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 4.0e-94 349.4 242 70.7
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 5.2e-94 349.0 397 57.7
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 6.8e-94 348.6 234 69.2
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.6e-93 346.7 330 62.1
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 5.7e-93 345.5 210 75.7
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 2.2e-92 343.6 239 68.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.1e-91 341.3 242 81.4
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.1e-91 341.3 289 70.9
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.1e-91 339.3 221 70.1
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 1.6e-90 337.4 294 70.4
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 3.5e-90 336.3 239 69.0
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 4.5e-90 335.9 221 71.0
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 3.3e-88 329.7 230 83.5
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 5.7e-85 318.9 247 66.4
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 7.5e-85 318.5 244 67.6
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 9.8e-85 318.2 288 69.1
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.7e-84 317.4 239 66.5
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 2.2e-84 317.0 295 68.5
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.8e-83 313.9 198 77.8
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 7.0e-83 312.0 298 67.4
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 9.2e-83 311.6 296 67.6
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.0e-82 310.5 296 66.9
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 2.3e-81 307.0 249 64.7
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.3e-80 302.8 229 76.9
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 4.3e-80 302.8 239 63.6
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 9.5e-80 301.6 246 64.2
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 2.1e-79 300.4 246 63.8
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 7.5e-77 292.0 232 63.8
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 8.3e-76 288.5 243 60.1
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 3.5e-74 283.1 196 67.9
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.1e-70 271.6 239 60.7
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 5.2e-70 269.2 229 71.2
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.5e-69 267.7 217 61.8
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 8.3e-68 261.9 243 56.0
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 6.0e-66 255.8 199 64.3
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.2e-63 248.1 238 57.1
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 4.4e-61 239.6 244 51.2
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 2.5e-48 197.2 277 56.3
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 4.9e-44 183.0 146 58.9
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.9e-43 181.0 131 66.4
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.1e-35 155.2 254 38.2
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 1.4e-35 154.8 245 41.2
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.1e-32 145.2 239 37.7
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 6.9e-30 136.0 228 39.5
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.2e-29 135.2 187 46.0
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.5e-29 134.8 228 41.2
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 4.5e-29 133.3 250 34.0
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 4.9e-28 129.8 226 40.3
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 1.2e-26 125.2 232 36.6
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.5e-26 123.6 237 38.8
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.6e-26 123.2 238 38.7
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 7.9e-26 122.5 233 36.5
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.3e-25 120.9 257 33.9
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.0e-25 120.6 248 34.3
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 3.0e-25 120.6 227 37.0
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 8.7e-25 119.0 238 37.8
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.7e-25 119.0 226 37.6
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 4.3e-24 116.7 234 34.2
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 5.6e-24 116.3 234 38.5
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 6.2e-23 112.8 216 35.6
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 4.0e-22 110.2 241 36.1
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 9.0e-22 109.0 53 92.5
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 3.2e-19 100.5 260 33.5
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 2.7e-18 97.4 245 33.1
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.9e-17 93.6 255 31.4
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 7.4e-16 89.4 205 35.1
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.6e-15 88.2 56 71.4
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 1.1e-14 85.5 161 37.3
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 1.1e-14 85.5 53 71.7
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.4e-14 84.3 46 80.4
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 2.4e-14 84.3 174 35.1
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.1e-14 84.0 201 30.8
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 3.1e-14 84.0 254 26.4
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.2e-13 82.0 171 36.3
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.6e-13 80.9 103 44.7
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 8.5e-12 75.9 192 32.3
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 3.0e-09 67.4 51 56.9
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 3.9e-09 67.0 155 32.9
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 8.8e-09 65.9 51 52.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 4.3e-08 63.5 249 27.7
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 4.3e-08 63.5 181 29.8
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.8e-07 60.8 37 64.9


User provided reference genes

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