Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0002099 Lotus japonicus HOM05D007665 ORTHO05D008293 1.4e-167 592.8 292 100.0
Glyma.15G163200 Glycine max HOM05D007665 ORTHO05D008293 1.7e-99 366.7 307 69.4
Glyma.09G056900 Glycine max HOM05D007665 ORTHO05D008293 1.1e-95 354.0 309 68.9
VMungo1309G2535 Vigna mungo HOM05D007665 ORTHO05D008293 1.2e-94 350.5 315 65.7
Phvul.009G238500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 8.8e-93 344.4 311 67.2
Lalb_Chr18g0052461 Lupinus albus HOM05D007665 ORTHO05D008293 2.4e-82 309.7 303 62.4
Phvul.003G143500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 3.1e-82 309.3 300 61.3
TPR.G9242 Trifolium pratense HOM05D007665 ORTHO05D008293 2.0e-81 306.6 300 60.3
Medtr2g036740 Medicago truncatula HOM05D007665 ORTHO05D008293 3.5e-81 305.8 296 59.1
Glyma.13G098200 Glycine max HOM05D007665 ORTHO05D008293 4.0e-77 292.4 300 58.7
VMungo1215G3214 Vigna mungo HOM05D007665 ORTHO05D008293 2.0e-76 290.0 301 60.1
Glyma.17G061500 Glycine max HOM05D007665 ORTHO05D008293 3.4e-76 289.3 300 57.7
Psat1g146200 Pisum sativum HOM05D007665 ORTHO05D008293 5.6e-71 271.9 296 57.8
QL11p005089 Quercus lobata HOM05D007665 ORTHO05D008293 7.5e-60 235.0 299 47.2
Lj4g0023476 Lotus japonicus HOM05D007665 ORTHO05D008293 8.3e-59 231.5 249 57.8
Lalb_Chr15g0084041 Lupinus albus HOM05D007665 ORTHO05D008293 4.1e-58 229.2 234 60.7
arahy.Tifrunner.gnm1.ann1.38WMVK Arachis hypogaea HOM05D007665 ORTHO05D008293 1.9e-55 220.3 301 48.5
CANSAT11G1651 Cannabis sativa HOM05D007665 ORTHO05D008293 1.9e-55 220.3 300 47.7
Prupe.1G081700 Prunus persica HOM05D007665 ORTHO05D008293 1.9e-55 220.3 299 46.5
arahy.Tifrunner.gnm1.ann1.HIJU8F Arachis hypogaea HOM05D007665 ORTHO05D008293 3.3e-55 219.5 301 49.2
RcHm_v2.0_Chr4g0400841 Rosa chinensis HOM05D007665 ORTHO05D008293 7.3e-55 218.4 310 46.5
CiPaw.07G194500 Carya illinoinensis HOM05D007665 ORTHO05D008293 9.5e-55 218.0 301 48.5
Cfa013407 Carpinus fangiana HOM05D007665 ORTHO05D008293 1.6e-54 217.2 304 47.0
CiPaw.08G034700 Carya illinoinensis HOM05D007665 ORTHO05D008293 1.6e-54 217.2 299 48.5
arahy.Tifrunner.gnm1.ann1.6P3KM7 Arachis hypogaea HOM05D007665 ORTHO05D008293 3.6e-54 216.1 316 49.7
FAN17G2593 Fragaria x ananassa HOM05D007665 ORTHO05D008293 3.6e-54 216.1 308 45.5
arahy.Tifrunner.gnm1.ann1.D7NBKG Arachis hypogaea HOM05D007665 ORTHO05D008293 6.2e-54 215.3 314 48.4
FvH4_4g07760 Fragaria vesca HOM05D007665 ORTHO05D008293 6.2e-54 215.3 308 45.5
FAN12G1950 Fragaria x ananassa HOM05D007665 ORTHO05D008293 6.2e-54 215.3 308 45.5
FAN07G1410 Fragaria x ananassa HOM05D007665 ORTHO05D008293 1.8e-53 213.8 308 45.1
Duzib150G0483 Durio zibethinus HOM05D007665 ORTHO05D008293 6.8e-53 211.8 307 47.6
FAN22G0501 Fragaria x ananassa HOM05D007665 ORTHO05D008293 9.9e-52 208.0 307 44.3
MD16G1253900 Malus domestica HOM05D007665 ORTHO05D008293 2.9e-51 206.5 302 46.7
COL.COLO4_35626 Corchorus olitorius HOM05D007665 ORTHO05D008293 4.9e-51 205.7 300 46.0
ClCG06G013480 Citrullus lanatus HOM05D007665 ORTHO05D008293 1.1e-50 204.5 312 44.2
Lalb_Chr12g0199491 Lupinus albus HOM05D007665 ORTHO05D008293 5.4e-50 202.2 302 49.0
MELO3C017449.2 Cucumis melo HOM05D007665 ORTHO05D008293 1.2e-49 201.1 327 42.5
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 1.2e-49 201.1 298 46.0
CsaV3_1G031740 Cucumis sativus L. HOM05D007665 ORTHO05D008293 2.1e-49 200.3 327 42.2
Sed0009659 Sechium edule HOM05D007665 ORTHO05D008293 3.5e-49 199.5 303 44.9
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 2.5e-47 193.4 300 45.0
MD13G1247000 Malus domestica HOM05D007665 ORTHO05D008293 8.4e-43 178.3 245 47.3
Gohir.D08G093300 Gossypium hirsutum HOM05D007665 ORTHO05D008293 1.4e-42 177.6 304 45.1
Manes.06G022200 Manihot esculenta HOM05D007665 ORTHO05D008293 4.2e-42 176.0 297 43.8
Potri.006G165500 Populus trichocarpa HOM05D007665 ORTHO05D008293 7.1e-42 175.3 298 43.0
Gorai.004G098900 Gossypium raimondii HOM05D007665 ORTHO05D008293 1.2e-41 174.5 305 44.6
Sabra06G0127300 Salix brachista HOM05D007665 ORTHO05D008293 5.1e-40 169.1 295 40.7
Ca_21241_v3 Cicer arietinum L. HOM05D007665 ORTHO05D008293 3.3e-39 166.4 244 49.6
TWI34G1272 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 3.3e-39 166.4 300 41.7
Sed0009111 Sechium edule HOM05D007665 ORTHO05D008293 1.3e-38 164.5 301 40.5
Atru.chr7.835 Acer truncatum HOM05D007665 ORTHO05D008293 1.8e-37 160.6 299 43.5
Gohir.A08G083600 Gossypium hirsutum HOM05D007665 ORTHO05D008293 1.8e-37 160.6 303 41.6
TPR.G5363 Trifolium pratense HOM05D007665 ORTHO05D008293 4.0e-37 159.5 242 47.5
Haze_21953 Corylus avellana HOM05D007665 ORTHO05D008293 5.3e-37 159.1 227 45.8
Ciclev10009102m.g Citrus clementina HOM05D007665 ORTHO05D008293 6.9e-37 158.7 301 41.9
Cpa.g.c26900 Carica papaya HOM05D007665 ORTHO05D008293 2.0e-36 157.1 334 37.7
Sabra18G0077500 Salix brachista HOM05D007665 ORTHO05D008293 2.0e-36 157.1 310 40.6
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 2.2e-35 153.7 298 38.9
Manes.14G158020 Manihot esculenta HOM05D007665 ORTHO05D008293 8.4e-35 151.8 317 38.2
TWI32G1073 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 3.5e-33 146.4 300 37.3
Lalb_Chr13g0300111 Lupinus albus HOM05D007665 ORTHO05D008293 4.6e-33 146.0 218 47.2
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 4.3e-31 139.4 324 35.2
Eucgr.C00139 Eucalyptus grandis HOM05D007665 ORTHO05D008293 2.0e-28 130.6 299 37.8
Medtr4g127680 Medicago truncatula HOM05D007665 ORTHO05D008293 2.6e-28 130.2 246 42.3
Rhsim01G0002100 Rhododendron simsii HOM05D007665 ORTHO05D008293 2.9e-27 126.7 310 32.9
Psat0s2178g0120 Pisum sativum HOM05D007665 ORTHO05D008293 2.4e-26 123.6 227 42.3
Actinidia01304 Actinidia chinensis HOM05D007665 ORTHO05D008293 6.7e-24 115.5 270 34.8
Hma1.2p1_1303F.1_g274400 Hydrangea macrophylla HOM05D007665 ORTHO05D008293 3.3e-23 113.2 245 37.1
Gohir.A08G019000 Gossypium hirsutum HOM05D007665 ORTHO05D008293 7.6e-20 102.1 171 40.4
GSVIVG01029234001 Vitis vinifera HOM05D007665 ORTHO05D008293 1.3e-19 101.3 266 34.6
Cc06_g13100 Coffea canephora HOM05D007665 ORTHO05D008293 6.5e-19 99.0 308 31.5
Gorai.004G027000 Gossypium raimondii HOM05D007665 ORTHO05D008293 2.5e-18 97.1 171 38.6
MBI16_g38083_MAGBIO Magnolia biondii HOM05D007665 ORTHO05D008293 7.1e-18 95.5 343 30.0
THA.LOC104811782 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 9.3e-18 95.1 242 33.5
Aqoxy7G02985 Aquilegia oxysepala HOM05D007665 ORTHO05D008293 1.3e-16 91.3 276 31.5
BcaC04g19976 Brassica carinata HOM05D010683 ORTHO05D008293 1.3e-16 91.3 240 31.7
C09p49230 Brassica napus HOM05D010683 ORTHO05D008293 1.3e-16 91.3 240 31.7
BolC9t57773H Brassica oleracea HOM05D010683 ORTHO05D008293 1.3e-16 91.3 240 31.7
BcaB08g36093 Brassica carinata HOM05D010683 ORTHO05D008293 1.8e-16 90.9 295 28.8
A02p08580 Brassica napus HOM05D010683 ORTHO05D008293 2.3e-16 90.5 294 29.3
BraA02t05927Z Brassica rapa HOM05D010683 ORTHO05D008293 2.3e-16 90.5 294 29.3
A10p14800 Brassica napus HOM05D010683 ORTHO05D008293 4.3e-15 86.3 237 31.2
Gohir.A05G003700 Gossypium hirsutum HOM05D007665 ORTHO05D008293 2.8e-14 83.6 299 29.4
Sp6g19060 Schrenkiella parvula HOM05D010683 ORTHO05D008293 2.4e-13 80.5 294 27.9
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 1.5e-12 77.8 321 28.7
MSTRG.6233 Avicennia marina HOM05D007665 ORTHO05D008293 2.0e-12 77.4 236 31.4
DCAR_009919 Daucus carota HOM05D007665 ORTHO05D008293 2.0e-12 77.4 240 34.2
PGR142G3274 Punica granatum HOM05D007665 ORTHO05D008293 2.0e-12 77.4 316 28.2
Carub.0008s1785 Capsella rubella HOM05D010683 ORTHO05D008293 5.9e-12 75.9 116 44.8
Thhalv10014550m.g Eutrema salsugineum HOM05D010683 ORTHO05D008293 1.3e-11 74.7 295 26.8
Gorai.009G003800 Gossypium raimondii HOM05D007665 ORTHO05D008293 2.9e-11 73.6 297 28.6
ATR0580G179 Amborella trichopoda HOM05D007665 ORTHO05D008293 5.0e-11 72.8 314 29.3
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 8.5e-11 72.0 168 33.9
Solyc07g017870.2 Solanum lycopersicum HOM05D023392 ORTHO05D008293 1.9e-10 70.9 245 31.0
Aa31LG3G13210 Aethionema arabicum HOM05D010683 ORTHO05D008293 7.2e-10 68.9 57 56.1
CARHR271130 Cardamine hirsuta HOM05D010683 ORTHO05D008293 9.3e-10 68.6 305 26.6
Gohir.D05G004100 Gossypium hirsutum HOM05D007665 ORTHO05D008293 2.1e-09 67.4 230 30.4
BcaC03g14162 Brassica carinata HOM05D010683 ORTHO05D008293 3.6e-09 66.6 241 27.8
AL8G33310 Arabidopsis lyrata HOM05D010683 ORTHO05D008293 4.6e-09 66.2 56 55.4
BcaB05g22338 Brassica carinata HOM05D010683 ORTHO05D008293 6.1e-09 65.9 237 27.0
C02p14330 Brassica napus HOM05D010683 ORTHO05D008293 7.9e-09 65.5 241 27.8
BolC2t07559H Brassica oleracea HOM05D010683 ORTHO05D008293 7.9e-09 65.5 241 27.8
AT5G57340 Arabidopsis thaliana HOM05D010683 ORTHO05D008293 1.8e-08 64.3 56 55.4
Oeu056507.1 Olea europaea HOM05D007665 ORTHO05D008293 3.3e-07 60.1 159 33.3
CSS0003937 Camellia sinensis var. sinensis HOM05D001536 ORTHO05D001442 4.3e-07 59.7 165 29.1
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 4.3e-07 59.7 197 29.4
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 7.4e-07 58.9 171 31.6
Sc18g0007540 Simmondsia chinensis HOM05D007665 ORTHO05D008293 2.2e-06 57.4 162 32.1
CDE05G1157 Ceratophyllum demersum HOM05D007665 ORTHO05D008293 2.8e-06 57.0 191 30.9
THA.LOC104813513 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 2.8e-06 57.0 165 31.5
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 3.7e-06 56.6 43 60.5
Oeu047264.1 Olea europaea HOM05D001536 ORTHO05D001442 3.7e-06 56.6 165 30.9
Peaxi162Scf01054g00014 Petunia axillaris HOM05D023392 ORTHO05D008293 3.7e-06 56.6 226 29.6
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 8.2e-06 55.5 244 27.9


User provided reference genes

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