Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 1.5e-66 256.1 135 100.0
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 2.3e-35 152.5 130 67.7
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 8.1e-33 144.1 128 64.8
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 1.8e-32 142.9 128 64.1
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 3.1e-32 142.1 127 63.0
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 3.4e-31 138.7 128 61.7
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 3.4e-31 138.7 129 61.2
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 4.4e-31 138.3 129 61.2
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 1.3e-30 136.7 125 60.8
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 4.9e-30 134.8 128 60.9
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 8.4e-30 134.0 127 58.3
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 8.4e-30 134.0 127 58.3
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 8.4e-30 134.0 112 67.9
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 1.1e-29 133.7 118 61.0
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 1.4e-29 133.3 127 60.6
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 2.4e-29 132.5 122 59.0
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 3.2e-29 132.1 124 60.5
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 5.4e-29 131.3 126 57.9
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 5.4e-29 131.3 130 58.5
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 5.4e-29 131.3 140 54.3
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 7.1e-29 131.0 128 57.8
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 7.1e-29 131.0 128 57.0
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 7.1e-29 131.0 128 57.0
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 9.3e-29 130.6 124 58.1
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 2.1e-28 129.4 127 59.1
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 2.1e-28 129.4 128 57.8
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 3.5e-28 128.6 126 59.5
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 3.5e-28 128.6 128 57.0
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 3.5e-28 128.6 128 57.0
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 4.6e-28 128.3 134 54.5
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 4.6e-28 128.3 134 54.5
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 6.0e-28 127.9 133 56.4
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 1.0e-27 127.1 126 57.1
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 1.3e-27 126.7 133 57.1
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 1.3e-27 126.7 134 53.7
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 1.7e-27 126.3 123 57.7
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 1.7e-27 126.3 129 57.4
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 2.3e-27 125.9 127 55.1
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 2.3e-27 125.9 123 56.9
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 3.0e-27 125.6 124 55.6
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 3.0e-27 125.6 135 54.8
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 5.1e-27 124.8 127 53.5
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 5.1e-27 124.8 127 55.9
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 5.1e-27 124.8 130 52.3
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 6.6e-27 124.4 121 58.7
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 6.6e-27 124.4 129 58.1
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 6.6e-27 124.4 125 53.6
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 8.7e-27 124.0 126 56.3
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 1.1e-26 123.6 126 57.1
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.1e-26 123.6 133 57.9
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 1.5e-26 123.2 132 55.3
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 1.5e-26 123.2 135 48.1
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 1.9e-26 122.9 128 54.7
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 1.9e-26 122.9 128 54.7
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 1.9e-26 122.9 125 54.4
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 2.5e-26 122.5 119 56.3
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 4.3e-26 121.7 136 50.7
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 5.6e-26 121.3 129 56.6
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 9.6e-26 120.6 117 53.0
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 1.6e-25 119.8 121 51.2
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 1.6e-25 119.8 104 59.6
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 1.6e-25 119.8 138 47.8
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 1.6e-25 119.8 116 53.4
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 2.1e-25 119.4 135 53.3
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 2.8e-25 119.0 130 52.3
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 3.6e-25 118.6 127 52.8
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 3.6e-25 118.6 116 52.6
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 6.2e-25 117.9 117 53.0
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 6.2e-25 117.9 118 54.2
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 8.1e-25 117.5 108 62.0
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 8.1e-25 117.5 122 56.6
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 1.4e-24 116.7 134 52.2
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 1.8e-24 116.3 129 50.4
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 2.4e-24 115.9 127 54.3
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 2.4e-24 115.9 129 54.3
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 2.4e-24 115.9 122 55.7
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 3.1e-24 115.5 117 53.8
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 1.5e-23 113.2 106 53.8
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.5e-23 113.2 122 54.1
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 2.0e-23 112.8 122 54.9
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 2.0e-23 112.8 122 50.8
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.6e-23 112.5 109 59.6
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 3.4e-23 112.1 119 52.1
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 3.4e-23 112.1 131 47.3
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 9.9e-23 110.5 122 54.9
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 1.3e-22 110.2 136 47.8
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 1.7e-22 109.8 108 55.6
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 1.7e-22 109.8 109 56.0
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 3.2e-21 105.5 118 52.5
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 3.5e-20 102.1 110 50.0
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 7.9e-20 100.9 130 46.9
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 1.3e-19 100.1 123 46.3
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 1.8e-19 99.8 111 52.3
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 1.5e-18 96.7 121 47.1
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 1.3e-17 93.6 95 52.6
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 4.9e-14 81.6 141 38.3
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 4.2e-13 78.6 120 39.2
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 4.3e-10 68.6 65 52.3
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 1.1e-08 63.9 93 34.4


User provided reference genes

Program Settings